[Bioc-devel] Bioconductor 3.15 is Released!

[Steve Pederson]

Thanks Lori. Really appreciate your efforts chasing this up.

All the best,

Steve

On Thu, 28 Apr 2022 at 21:37, Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> we investigated the issue and identified the cause.
> The recently accepted new packages should be available after the next
> build report posting.
> Sorry for the inconvenience
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Christian Arnold <chrarnold using web.de>
> Sent: Thursday, April 28, 2022 7:56 AM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: Re: [Bioc-devel] Bioconductor 3.15 is Released!
>
> Hi, the package GRaNIE faces the same issue, and it built successfully
> before the deadlines (see
>
> https://secure-web.cisco.com/1ZElGk0dWxaMybf8b0q7Aa6bGn92fCTyEg2WiLaYE7xPX9_hqtULZ05jw5zwiwL23gyAmQEPXv6cmeiUNP97GfXM35NYvDg8Ujs2czImvxco-u9dX6rykplvPc--MKnJ09ZN64MAvJ5COMHdJnJznSvQvq0jH4H7jUaG9-eUEz5igETaZyEygkMHERiRyRXrQ5FMsQBOYDs6VRey3gJhZwI9gZGMtAVymVRcIUKNl16Nrwx-_as4540P5dCxZlrMal8wt8ZiAbZ_YR-tulUk8mhkXbxA5K8_-X2qysC5k8CN71VnMc-iamvtyPvdcHWTj/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F2556).
> From my
> understanding, it should be included in the release cycle also, could
> someone check and explain please? Thanks!
>
>
> On 28/04/2022 04:37, Steve Pederson wrote:
> > Congrats to the team on getting everything done. I did notice a handful
> of
> > the packages announced in release 3.15 don't seem to have made it though.
> > For a subset of new packages, links in the official release page take me
> to
> > Bioconductor 3.16 (devel) and they don't install using
> > BiocManager::install('pkgname', version = '3.15'). Obviously two I have a
> > vested interest in are in this group (extraChIPs and sSNAPPY) but there
> > seem to be a few others such as as APL, DifferentialRegulation, ompBAM,
> > terraTCGAdata, vectraPolarisData which are included in the announcement,
> > but can't be installed. I also noticed that this group were very late
> > package inclusions having their Github Contributions iIssues closed only
> 5
> > or so days ago. Have we missed something in our code, or is this just a
> > glitch that will resolve in the next day or so?
> >
> > If it's any help, I did manage a successful install using
> > BiocManager::install('pkgname', version = '3.16')
> >
> > Thanks again,
> >
> > Steve
> >
> > On Thu, 28 Apr 2022 at 06:56, Kern, Lori <Lori.Shepherd using roswellpark.org>
> > wrote:
> >
> >> Thanks to all developers and community members for contributing to the
> >> project!
> >> Please see the full release announcement:
> >>
> >>
> https://secure-web.cisco.com/1PYOTWQtcVIFISmjIke7k1WNFEkPhwn5P-8EuQE11jpBSJUP17heETbnBV2bPzW3_zsS4rv6oB2fqtu58g1ZjDlK0q2SOr_i0v46uFQnE_2F0oWLN2Eag1bDsa5E1IU-_0zNGFQ8ixayH5QW80qHTF5DxaGgYTLTjSlgcGo80bSND173-0N0Nzln5MMRgFH0nApKf-jECFzvRmDRo7_IJp9P7iAW-_Evwe7AQNPVR5NK5kdqmZBWk77nbe0LJcbPqHsIjPg1pDBSpjY7fVS1l5uR8ChHkuzmlIhOe3AuNS4lsWqBOS2etQCd3KIOftVje/https%3A%2F%2Fbioconductor.org%2Fnews%2Fbioc_3_15_release%2F
> >>
> >>
> >> Cheers,
> >> Sent on behalf of the Bioconductor Core Team
> >>
> >>
> >>
> >>
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