[Bioc-devel] Bioconductor 3.15 is Released!

[Kern, Lori]

we investigated the issue and identified the cause.
The recently accepted new packages should be available after the next build report posting.
Sorry for the inconvenience


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Christian Arnold <chrarnold using web.de>
Sent: Thursday, April 28, 2022 7:56 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Bioconductor 3.15 is Released!

Hi, the package GRaNIE faces the same issue, and it built successfully
before the deadlines (see
https://secure-web.cisco.com/1ZElGk0dWxaMybf8b0q7Aa6bGn92fCTyEg2WiLaYE7xPX9_hqtULZ05jw5zwiwL23gyAmQEPXv6cmeiUNP97GfXM35NYvDg8Ujs2czImvxco-u9dX6rykplvPc--MKnJ09ZN64MAvJ5COMHdJnJznSvQvq0jH4H7jUaG9-eUEz5igETaZyEygkMHERiRyRXrQ5FMsQBOYDs6VRey3gJhZwI9gZGMtAVymVRcIUKNl16Nrwx-_as4540P5dCxZlrMal8wt8ZiAbZ_YR-tulUk8mhkXbxA5K8_-X2qysC5k8CN71VnMc-iamvtyPvdcHWTj/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F2556). From my
understanding, it should be included in the release cycle also, could
someone check and explain please? Thanks!


On 28/04/2022 04:37, Steve Pederson wrote:
> Congrats to the team on getting everything done. I did notice a handful of
> the packages announced in release 3.15 don't seem to have made it though.
> For a subset of new packages, links in the official release page take me to
> Bioconductor 3.16 (devel) and they don't install using
> BiocManager::install('pkgname', version = '3.15'). Obviously two I have a
> vested interest in are in this group (extraChIPs and sSNAPPY) but there
> seem to be a few others such as as APL, DifferentialRegulation, ompBAM,
> terraTCGAdata, vectraPolarisData which are included in the announcement,
> but can't be installed. I also noticed that this group were very late
> package inclusions having their Github Contributions iIssues closed only 5
> or so days ago. Have we missed something in our code, or is this just a
> glitch that will resolve in the next day or so?
>
> If it's any help, I did manage a successful install using
> BiocManager::install('pkgname', version = '3.16')
>
> Thanks again,
>
> Steve
>
> On Thu, 28 Apr 2022 at 06:56, Kern, Lori <Lori.Shepherd using roswellpark.org>
> wrote:
>
>> Thanks to all developers and community members for contributing to the
>> project!
>> Please see the full release announcement:
>>
>> https://secure-web.cisco.com/1PYOTWQtcVIFISmjIke7k1WNFEkPhwn5P-8EuQE11jpBSJUP17heETbnBV2bPzW3_zsS4rv6oB2fqtu58g1ZjDlK0q2SOr_i0v46uFQnE_2F0oWLN2Eag1bDsa5E1IU-_0zNGFQ8ixayH5QW80qHTF5DxaGgYTLTjSlgcGo80bSND173-0N0Nzln5MMRgFH0nApKf-jECFzvRmDRo7_IJp9P7iAW-_Evwe7AQNPVR5NK5kdqmZBWk77nbe0LJcbPqHsIjPg1pDBSpjY7fVS1l5uR8ChHkuzmlIhOe3AuNS4lsWqBOS2etQCd3KIOftVje/https%3A%2F%2Fbioconductor.org%2Fnews%2Fbioc_3_15_release%2F
>>
>>
>> Cheers,
>> Sent on behalf of the Bioconductor Core Team
>>
>>
>>
>>
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