[Bioc-devel] Packages relying on rJava failing on merida1

[Jennifer Wokaty]

Anestis,

I needed to reinstall rJava on merida1.  I was able to install fastreeR without issue after that. The error should be resolved on the build report in the next two days.

Jennifer Wokaty
they/them
Bioconductor Core Team
CUNY SPH

________________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Anestis Gkanogiannis via Bioc-devel <bioc-devel using r-project.org>
Sent: Tuesday, April 19, 2022 8:51 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Packages relying on rJava failing on merida1

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Hello Bioconductor core team,

My package 'fastreeR' is marked with ERROR on merida1 on build/check report for BioC 3.15, although I haven't changed nor pushed an updated version, since package accepted.
I then noticed the same error on merida1 with all packages (for example 'gaggle', 'sarks', 'Rcpi', etc.) that use 'rJava', with error message
"error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rJava/libs/rJava.so':dlopen(/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rJava/libs/rJava.so, 6):
Library not loaded: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/rJava/libs/rJava.so
Reason: image not found
"
​​​​​
Is it a problem that you are aware of, or do we need to do something in our code?

With kind regards,

Anestis Gk.

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