[Bioc-devel] Dependence from another New package

[Anatoly Sorokin]

Dear Lori,

It is not strictly the update, as software package newer went through
moderation stage due to problems with large database file. We've split the
original package into software and data part, and now the data part is
under review, but I would not call what happened to the software package as
an update :) as it was newer accepted.

Cheers,
Anatoly


Cheers,


On Mon, Sep 27, 2021 at 11:12 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> Ah okay. So this is an update to an existing software package to include
> the dependency on the new experiment data package.  Sorry I missed that
> part in the original email.   I would just wait until the data package
> makes it through the review.  In the future I would wait to make changes to
> the software package until the data package was accepted.
>
> Cheers
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Anatoly Sorokin <lptolik using gmail.com>
> *Sent:* Monday, September 27, 2021 5:52 AM
> *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] Dependence from another New package
>
> Dear Lori, thank you!
>
> I have additional question: our software package is already in the
> bioconductor git, should I add the original github or bioconductor git to
> the AdditionalPackage line to get another package added to the review?
>
> Thank you,
> Anatoly
>
> On Mon, Sep 27, 2021 at 12:26 PM Kern, Lori <Lori.Shepherd using roswellpark.org
> >
> wrote:
>
> >
> https://secure-web.cisco.com/1ow-ZDhZ0NTF2PfdRSLQuskm2EA4UHdXlwovzapeXoTOWEzcC-nl0v9wpRPOFKLYduwBFLRlJ4GXsyIVbomFztWS8Nfrcn2x2KMyIDoAmyVUaDYn8Vr3Epdwcuylp2aH9e93s2nYrjmxWIZ1SXnYv28xwk57bE9X1wzSRA7Sdg5KNIgSeEjvZ5KCS70X2GFoSCWR43tSRh2DZ4nIijL9bLtnMQP_hk72VkBD_Cw8pWvSzo_8qvlhBcS6s4IufZiuR0uKcTZ7rsmVVXeoP2CRlLr8Krp1Nmbtv4mgwPavebSIYdrKmNlEsIsALUfXjMeRv/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%23submitting-related-packages
> >
> > In the documentation there is a way to submit related packages under the
> > same review. If they are submitted under the same issue they can be found
> > and reviewed together
> >
> > Get Outlook for iOS <
> https://secure-web.cisco.com/1V9yG0vYO9YdaYbIo5AbK8-ROWQ2XFAY4lkNFl5Kv3B4EZk9Y_ZiYjiDXzm7ktF382AXnOhqxzjrsKm4yu9zuNeJUHkmY2BKWvB5SMDZJOtgP4Fc7fsLM_BQqaxrQWOat-9nikhPY6swF0ziWp74RC2u6hQE35dwtID9CNkfWk7yVIcTLpUDgoah_ojEdn1lAepS5jlYJvIGYtpti1PiYxoIzx6qES3BmTe6sS1AzNcmOZn0HmTY8PeGV_DQUYU7QD82KNCQJaTKFXYzKe_nllnQibScf4TQlPm016hjGRkY_oo5kxGktH3UypVpd2i44/https%3A%2F%2Faka.ms%2Fo0ukef
> >
> > ------------------------------
> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> > Anatoly Sorokin <lptolik using gmail.com>
> > *Sent:* Sunday, September 26, 2021 7:59:17 PM
> > *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> > *Subject:* [Bioc-devel] Dependence from another New package
> >
> > Hi,
> > We have submitted package, that required large data. According to
> > suggestion from bioconductor team, we split the package into two parts,
> > first of which was recently become available on AnnotationHub.
> > Once the data package was on the hub, I've submitted the new version of
> the
> > software package to the git, but validation had failed due to missing
> data
> > package, as it is under review at the moment and not available for on
> > bioconductor yet.
> > Could any one suggest how to resolve this issue, when two packages under
> > review simultaneously?
> >
> > Thank you in advance,
> > Anatoly
> >
> >         [[alternative HTML version deleted]]
> >
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