[Bioc-devel] Dependence from another New package
Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Sep 27 15:12:41 CEST 2021
Ah okay. So this is an update to an existing software package to include the dependency on the new experiment data package. Sorry I missed that part in the original email. I would just wait until the data package makes it through the review. In the future I would wait to make changes to the software package until the data package was accepted.
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Anatoly Sorokin <lptolik using gmail.com>
Sent: Monday, September 27, 2021 5:52 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Dependence from another New package
Dear Lori, thank you!
I have additional question: our software package is already in the
bioconductor git, should I add the original github or bioconductor git to
the AdditionalPackage line to get another package added to the review?
On Mon, Sep 27, 2021 at 12:26 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
> In the documentation there is a way to submit related packages under the
> same review. If they are submitted under the same issue they can be found
> and reviewed together
> Get Outlook for iOS <https://secure-web.cisco.com/1V9yG0vYO9YdaYbIo5AbK8-ROWQ2XFAY4lkNFl5Kv3B4EZk9Y_ZiYjiDXzm7ktF382AXnOhqxzjrsKm4yu9zuNeJUHkmY2BKWvB5SMDZJOtgP4Fc7fsLM_BQqaxrQWOat-9nikhPY6swF0ziWp74RC2u6hQE35dwtID9CNkfWk7yVIcTLpUDgoah_ojEdn1lAepS5jlYJvIGYtpti1PiYxoIzx6qES3BmTe6sS1AzNcmOZn0HmTY8PeGV_DQUYU7QD82KNCQJaTKFXYzKe_nllnQibScf4TQlPm016hjGRkY_oo5kxGktH3UypVpd2i44/https%3A%2F%2Faka.ms%2Fo0ukef>
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Anatoly Sorokin <lptolik using gmail.com>
> *Sent:* Sunday, September 26, 2021 7:59:17 PM
> *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* [Bioc-devel] Dependence from another New package
> We have submitted package, that required large data. According to
> suggestion from bioconductor team, we split the package into two parts,
> first of which was recently become available on AnnotationHub.
> Once the data package was on the hub, I've submitted the new version of the
> software package to the git, but validation had failed due to missing data
> package, as it is under review at the moment and not available for on
> bioconductor yet.
> Could any one suggest how to resolve this issue, when two packages under
> review simultaneously?
> Thank you in advance,
> [[alternative HTML version deleted]]
> Bioc-devel using r-project.org mailing list
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
Bioc-devel using r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
More information about the Bioc-devel