[Bioc-devel] Install and check error in Windows without any relevant message

[Hervé Pagès]

Hi Ramon,

This looks like a communication problem between riesling1 and nebbiolo1. 
Hopefully this is something transient. Fingers crossed!

Cheers,
H.

On 11/05/2021 16:38, Ramon Diaz-Uriarte wrote:
> To partially answer myself, on looking more carefully, the INSTALL problem
> seems to happen in the call to curl.exe (i.e., not in the R package
> installation itself per se). It seems this failed
> 
> C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OncoSimulR_2.99.94.tar.gz
> 
> even if the tar.gz is actually there. Can I assume this is probably a
> transient error?
> 
> 
> 
> And if I understand correctly the CHECK error ("Installation failed.
> See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for
> details") it can also be traced to a curl problem?
> 
> Best,
> 
> 
> 
> On Tue, 11-May-2021, at 20:15:24, Ramon Diaz-Uriarte <rdiaz02 using gmail.com> wrote:
>> Dear All,
>>
>> I package I maintain (OncoSimulR), which has not experienced any changes in
>> the last week, has failed Install and Check (but not Build or Build bin) on
>> Windows
>> (https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-install.html
>> https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-checksrc.html
>> ).
>>
>> However, I do not know what to do given the error output. For Install the message is
>>
>> curl: (52) Empty reply from server
>>
>>
>> And for Check is just
>>
>> * checking whether package 'OncoSimulR' can be installed ... ERROR
>> Installation failed.
>> See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details.
>> * DONE
>>
>> Status: 1 ERROR
>> See
>>    'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00check.log'
>> for details.
>>
>> curl: (52) Empty reply from server
>>
>>
>> I do not use curl in the code. Is this a problem fetching dependencies or a
>> problem caused by a package I depend on?
>>
>>
>> Thanks,
>>
>>
>> R.
> 
> 

-- 
Hervé Pagès

Bioconductor Core Team
hpages.on.github using gmail.com