[Bioc-devel] Install and check error in Windows without any relevant message

[Ramon Diaz-Uriarte]

Hi Hervé,

Thanks! I'll keep my fingers crossed :-)

Best,

R.


On Wed, 12-May-2021, at 04:05:05, Hervé Pagès <hpages.on.github using gmail.com> wrote:
> Hi Ramon,
>
> This looks like a communication problem between riesling1 and
> nebbiolo1. Hopefully this is something transient. Fingers crossed!
>
> Cheers,
> H.
>
> On 11/05/2021 16:38, Ramon Diaz-Uriarte wrote:
>> To partially answer myself, on looking more carefully, the INSTALL problem
>> seems to happen in the call to curl.exe (i.e., not in the R package
>> installation itself per se). It seems this failed
>> C:\cygwin\bin\curl.exe -O
>> http://155.52.207.165/BBS/3.13/bioc/src/contrib/OncoSimulR_2.99.94.tar.gz
>> even if the tar.gz is actually there. Can I assume this is probably a
>> transient error?
>> And if I understand correctly the CHECK error ("Installation failed.
>> See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for
>> details") it can also be traced to a curl problem?
>> Best,
>> On Tue, 11-May-2021, at 20:15:24, Ramon Diaz-Uriarte <rdiaz02 using gmail.com> wrote:
>>> Dear All,
>>>
>>> I package I maintain (OncoSimulR), which has not experienced any changes in
>>> the last week, has failed Install and Check (but not Build or Build bin) on
>>> Windows
>>> (https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-install.html
>>> https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-checksrc.html
>>> ).
>>>
>>> However, I do not know what to do given the error output. For Install the message is
>>>
>>> curl: (52) Empty reply from server
>>>
>>>
>>> And for Check is just
>>>
>>> * checking whether package 'OncoSimulR' can be installed ... ERROR
>>> Installation failed.
>>> See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details.
>>> * DONE
>>>
>>> Status: 1 ERROR
>>> See
>>>    'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00check.log'
>>> for details.
>>>
>>> curl: (52) Empty reply from server
>>>
>>>
>>> I do not use curl in the code. Is this a problem fetching dependencies or a
>>> problem caused by a package I depend on?
>>>
>>>
>>> Thanks,
>>>
>>>
>>> R.
>> 


-- 
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Autónoma de Madrid 
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 using gmail.com
       ramon.diaz using iib.uam.es

https://ligarto.org/rdiaz