[Bioc-devel] Problem with updated cache on Bioc builders

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Jul 29 20:32:05 CEST 2021

Thank you for making us aware.

Its interesting because I have already cleaned this up and initialized the caches on the builders so I suspect there is a package that is somehow force creating the old location.

Regardless,  I will take care of correcting on the builders and notifying any offending package.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Lukas Weber <lukas.weber.edu using gmail.com>
Sent: Thursday, July 29, 2021 2:26 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Cc: Helena L. Crowell <helena.crowell using uzh.ch>
Subject: [Bioc-devel] Problem with updated cache on Bioc builders


We have pushed an update to our package SpatialExperiment, and now have the
following error in checks (pasted below) on the build report.

On our local machines I can fix this error by deleting the old cache, as
explained in the link in the error message.

Is there a similar way that we can fix this on the builders, e.g. deleting
the old cache?

Error in (function (cache = getBFCOption("CACHE"), ask = interactive())  :
  DEFUNCT: As of BiocFileCache (>1.15.1), default caching location has
  Problematic cache: /Users/biocbuild/Library/Caches/BiocFileCache


Lukas M. Weber, Ph.D.
Postdoctoral Fellow
Department of Biostatistics
Johns Hopkins Bloomberg School of Public Health

        [[alternative HTML version deleted]]

Bioc-devel using r-project.org mailing list

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list