[Bioc-devel] Problem with updated cache on Bioc builders

[Lukas Weber]

Great, thank you!


On Thu, Jul 29, 2021 at 2:32 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> Thank you for making us aware.
>
> Its interesting because I have already cleaned this up and initialized the
> caches on the builders so I suspect there is a package that is somehow
> force creating the old location.
>
> Regardless,  I will take care of correcting on the builders and notifying
> any offending package.
>
> Cheers,
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Lukas
> Weber <lukas.weber.edu using gmail.com>
> *Sent:* Thursday, July 29, 2021 2:26 PM
> *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Cc:* Helena L. Crowell <helena.crowell using uzh.ch>
> *Subject:* [Bioc-devel] Problem with updated cache on Bioc builders
>
> Hi,
>
> We have pushed an update to our package SpatialExperiment, and now have the
> following error in checks (pasted below) on the build report.
>
> On our local machines I can fix this error by deleting the old cache, as
> explained in the link in the error message.
>
> Is there a similar way that we can fix this on the builders, e.g. deleting
> the old cache?
>
> ---
> Error in (function (cache = getBFCOption("CACHE"), ask = interactive())  :
>   DEFUNCT: As of BiocFileCache (>1.15.1), default caching location has
> changed.
>   Problematic cache: /Users/biocbuild/Library/Caches/BiocFileCache
>   See
>
> https://secure-web.cisco.com/1GjQUYjyFRFdYYJUy1SjmIyfwru3fZ-JEzzf4oOVP42vsAaGh03vIDaiWZO44EiXu0DQFfjm1ozPZwvPnPJQWGDyJMQocGN94wiS7pv57yyBIPipyQGBTFAIZ--oLwniH7JQzZQg5GkdbRhXq_hefehHUVLIYdsojDFg3QhFCPvgyFkf-j-0S7h2Gv4-5S2YyIDTeeqK__5tfiudxFIYFsv5TBjdInySNnMIRNAYWf4c7hgGS0D0_C-fqbsXPg3m8WF0RjRsNfQ0I5NbOvBx6bRpSYw4-Giu0rAPIbACG2JOFKVVCP-J9P3Dwi4otbQ38/https%3A%2F%2Fwww.bioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fvignettes%2FBiocFileCache%2Finst%2Fdoc%2FBiocFileCache.html%23default-caching-location-update
> ---
>
> Thanks,
> Lukas
>
> --
> Lukas M. Weber, Ph.D.
> Postdoctoral Fellow
> Department of Biostatistics
> Johns Hopkins Bloomberg School of Public Health
>
> https://secure-web.cisco.com/1yOwvTARGQWbali-0G-eecNP_bWqxHWBnu0WNnJ3F1b5hF_Kswna6pJ9OGGggp09uncwR0HNnL-OlUHUIqajkhEmqKRBM20LLHCgsuQkiFpYW-4D1AkPpC-UzIv6veYm8H5pBjImwBtBavuw6XRPVhAY-zUVnDCtylplSEA54VUN7DKNWTwyK3WpmqG4liu-s5jOmxOUyZWxsimXpnQ3F6lb6gt_N2ZjVI5-M1xRIjdv2AjE7OPKsmgRIRAjm0xPt7HM7C21xiWlPDrc8x7-_ZTycv_03yP85KDM2TPWVYyCT9USwbBXNUsiHb4GSF5pf/https%3A%2F%2Flmweber.org%2F
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