[Bioc-devel] [External] Re: Bioconductor Package Error: LRcellTypeMarkers

[Ma, Wenjing]

Thank you for your quick response! I will go check the comments under the issue.

Sincerely,
Wenjing
________________________________
From: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Monday, January 11, 2021 2:28 PM
To: Ma, Wenjing <wenjing.ma using emory.edu>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [External] Re: Bioconductor Package Error: LRcellTypeMarkers

This message was sent securely using Zix�<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.zixcorp.com%2Fget-started%2F&data=04%7C01%7Cwenjing.ma%40emory.edu%7C6365fbc4303e416559c408d8b6671063%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C637459901061252977%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=WLKg7NWT6h5Ed%2BfvR982VA%2FSSdEOYOeE8A16RwLRcfY%3D&reserved=0>

Thank you for the detailed report.  I will go on the builder to have a look. We recently updated the devel builders of R including the mac so I'm hoping it has resolved itself.  I will post more on your open issue and have informed your reviewer to look at the package in the meantime.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Ma, Wenjing <wenjing.ma using emory.edu>
Sent: Monday, January 11, 2021 2:21 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Bioconductor Package Error: LRcellTypeMarkers

Dear Bioconductor Team,

I have been working on passing the review process of my package LRcellTypeMarkers (https://secure-web.cisco.com/1Dny9I4_zN4ao4HRAmKSMgmMSsVJF9_DvrDEyi34MzAYGXc8Nka_Sa5N8LjSwhaXsKj9gctoT1uU0KyjJGQZnfmHR03Nwcdkiyimb2ohwae9_jsdV2WHvimNA2f4qxtSY6yjjA3R8fNZjgS6xxo74IC-esJHIKKgw6OXBHdu32l_pjeqqwl5KREjAvGNQTzcyreRHs1M5nbQGxBoLLT8n8TlUvB_kpk_iadLNrn2uHXcrar4fshR_0vy8w1uXc4Gz2Sr3bEcUn9uupTcJwl33HcU80VkjT3GKunnyuLQxQq-qcJXx78ursn_eLAVZORYX/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F1818<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsecure-web.cisco.com%2F1Dny9I4_zN4ao4HRAmKSMgmMSsVJF9_DvrDEyi34MzAYGXc8Nka_Sa5N8LjSwhaXsKj9gctoT1uU0KyjJGQZnfmHR03Nwcdkiyimb2ohwae9_jsdV2WHvimNA2f4qxtSY6yjjA3R8fNZjgS6xxo74IC-esJHIKKgw6OXBHdu32l_pjeqqwl5KREjAvGNQTzcyreRHs1M5nbQGxBoLLT8n8TlUvB_kpk_iadLNrn2uHXcrar4fshR_0vy8w1uXc4Gz2Sr3bEcUn9uupTcJwl33HcU80VkjT3GKunnyuLQxQq-qcJXx78ursn_eLAVZORYX%2Fhttps%253A%252F%252Fgithub.com%252FBioconductor%252FContributions%252Fissues%252F1818&data=04%7C01%7Cwenjing.ma%40emory.edu%7C6365fbc4303e416559c408d8b6671063%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C637459901061252977%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=fe%2BDFn5IJXBKVxDyBZpZGOqc9mndCmVpEJOAwSD%2F5OQ%3D&reserved=0>). I want to post my question here and see if anyone else has also encountered the same issue.

Previously, I got this error from the build report saying a resource failed to be downloaded. However, on my own computer (macOS Catalina 10.15.7) with R devel version (r79596), I cannot repeat this error. Not sure if it is because I already have the cache for the package.

Error: processing vignette 'LRcellTypeMarkers-vignette.Rmd' failed with diagnostics:
failed to load resource
  name: EH4548
  title: Mouse Frontal Cortex Marker Genes
  reason: 1 resources failed to download
--- failed re-building LRcellTypeMarkers-vignette.Rmd


I have tried devtools::check() and  BiocCheck::BiocCheck() both locally without any warnings or errors. I wonder what might cause this error and any suggestions would be appreciated! Thank you in advance!

Sincerely,

Wenjing Ma

2nd-year Ph.D. student, CSI Program, Emory

P: +1(917)-496-1226 | W: https://secure-web.cisco.com/1Q-Egv-4IFyRS3Cfz59mysLp6mh8nKqS3BSpkZaGwDUg5i36ker2jDVC0Tb-iMTIGTT5eXGmMBFAhfamjxUEknxfO7HaobRNDD-VUN5MKOtdUQMN4Sxf6L1bgQoORO8qd0u7z1opiEKLEJsJ7ZFqPJCsmBxQeQkUrEVNwi3dM6_tzLyKBnNxMXhDLBObTQKKLMgBc8XYs-RwLC6sKpAZFqD-J_GyIctKgRNqEVwQ-z0qnYX95d4nGiU7ZgKslSEjNTL-DNNbcXzvaAhwH3QRo16d-5i3MYD7X8IdpZmT0MFNV19f03RKFMHwIRS6y6MSl/https%3A%2F%2Fmarvinquiet.github.io%2F<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsecure-web.cisco.com%2F1Q-Egv-4IFyRS3Cfz59mysLp6mh8nKqS3BSpkZaGwDUg5i36ker2jDVC0Tb-iMTIGTT5eXGmMBFAhfamjxUEknxfO7HaobRNDD-VUN5MKOtdUQMN4Sxf6L1bgQoORO8qd0u7z1opiEKLEJsJ7ZFqPJCsmBxQeQkUrEVNwi3dM6_tzLyKBnNxMXhDLBObTQKKLMgBc8XYs-RwLC6sKpAZFqD-J_GyIctKgRNqEVwQ-z0qnYX95d4nGiU7ZgKslSEjNTL-DNNbcXzvaAhwH3QRo16d-5i3MYD7X8IdpZmT0MFNV19f03RKFMHwIRS6y6MSl%2Fhttps%253A%252F%252Fmarvinquiet.github.io%252F&data=04%7C01%7Cwenjing.ma%40emory.edu%7C6365fbc4303e416559c408d8b6671063%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C637459901061262978%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=89bXZkjDlWWvY2I%2FLhldk0pc4kT2E3mjMvNvr6JB17c%3D&reserved=0>

________________________________

This e-mail message (including any attachments) is for t...{{dropped:14}}

_______________________________________________
Bioc-devel using r-project.org mailing list
https://secure-web.cisco.com/1CHcc5HFi3He6ocuz1Fs_ipRvWu5FZRiBaQ9t5B8DRUbx7XQc4wyx4iybKMukmyN3M7LcuxKdUJo-HEstSLUSfQ5Szo7hr2tx2sS75NVQUAESI0-HQF_Wct6YU_rkythJEJCV4-zQEGQKJV-MgVbPzzaHod7U1waysKgAc4CfT9VyrmtUD3TZZQSRlehCr7uXpMDS0XN5UGqgLIkYTVyKmz9cti396xwDwk_h0-ubHOPn0nrm9qnTRRxnHzJbwIaj4HbYCU0DOFIU24eTyko1Pc9zAJ8s89lDfX_j_Tj4JWOKiCRF2NnGjkS0maGyS1xS/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsecure-web.cisco.com%2F1CHcc5HFi3He6ocuz1Fs_ipRvWu5FZRiBaQ9t5B8DRUbx7XQc4wyx4iybKMukmyN3M7LcuxKdUJo-HEstSLUSfQ5Szo7hr2tx2sS75NVQUAESI0-HQF_Wct6YU_rkythJEJCV4-zQEGQKJV-MgVbPzzaHod7U1waysKgAc4CfT9VyrmtUD3TZZQSRlehCr7uXpMDS0XN5UGqgLIkYTVyKmz9cti396xwDwk_h0-ubHOPn0nrm9qnTRRxnHzJbwIaj4HbYCU0DOFIU24eTyko1Pc9zAJ8s89lDfX_j_Tj4JWOKiCRF2NnGjkS0maGyS1xS%2Fhttps%253A%252F%252Fstat.ethz.ch%252Fmailman%252Flistinfo%252Fbioc-devel&data=04%7C01%7Cwenjing.ma%40emory.edu%7C6365fbc4303e416559c408d8b6671063%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C637459901061262978%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=bWg3DRBqcOgN314uML7P4xLRnvAVhaibqCuNH%2F8mfDA%3D&reserved=0>


This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

This message was secured by Zix<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.zixcorp.com%2F&data=04%7C01%7Cwenjing.ma%40emory.edu%7C6365fbc4303e416559c408d8b6671063%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C637459901061272975%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=D2zbStP9LebW8KSKDU9YM7j0MquX2LUgToUSHB1dt50%3D&reserved=0>�.

________________________________

This e-mail message (including any attachments) is for the sole use of
the intended recipient(s) and may contain confidential and privileged
information. If the reader of this message is not the intended
recipient, you are hereby notified that any dissemination, distribution
or copying of this message (including any attachments) is strictly
prohibited.

If you have received this message in error, please contact
the sender by reply e-mail message and destroy all copies of the
original message (including attachments).

	[[alternative HTML version deleted]]