[Bioc-devel] EXTERNAL: Re: Encountering Issues with Github sync

[Marcel Ramos]

Hi Krithika,

Regarding Step #10:

It is a good idea to have a release branch checkout in your GitHub 
(origin) repository
in case you need to commit bug fixes to that branch:

http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ 
<http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/>

Best,

Marcel

On 2/25/21 3:02 PM, Krithika Bhuvaneshwar wrote:
> Thank you for catching that !  That was very helpful
>
> I have now completed Steps# 1 - 7 and Step # 9 from here:
> *http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
> <http://bioconductor.org/developers/how-to/git/sync-existing-repositories/>
> *(I think Step # 8 does not apply to me)
>
> I don't exactly understand what Step # 10 is. Is this what I should do , or
> can I skip this ? Please advise.
>
>
> *10. Repeat for the release branch, replacing master with the name of the
> release branch, e.g., RELEASE_3_6. It may be necessary to create the
> release branch in the local repository.*
>
> git checkout RELEASE_13_3
>   git merge upstream/RELEASE_13_3
>   git merge origin/RELEASE_13_3
>   git push upstream RELEASE_13_3
>   git push origin RELEASE_13_3
>
>
> Thanks,
> Krithika
>
>
>
> On Thu, Feb 25, 2021 at 12:33 PM Martin Morgan <mtmorgan.bioc using gmail.com>
> wrote:
>
>> The Bioconductor remote should not include 'ICBI,
>>
>>      git remote remove upstream
>>      git remote add upstream git using git.bioconductor.org:packages/CINdex.git
>>
>> On 2/25/21, 11:40 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" <
>> bioc-devel-bounces using r-project.org on behalf of kb472 using georgetown.edu> wrote:
>>
>>      Hello,
>>
>>      We are the package maintaines for the CINdex package.  We have made
>> changes
>>      in our package to address the build errors for the upcoming release.
>> The
>>      latest code is here in our Gtithub account *
>> https://github.com/ICBI/CINdex
>>      <https://github.com/ICBI/CINdex>  . *I'm trying to sync it with the
>> BioC
>>      Github repo, but encountering errors. Would appreciate some help
>>
>>      These are the steps I did:
>>
>>      1) Updated code so that there are no build errors. Updated version
>>      information in DESCRIPTION File (changed from 1.19.0 to 1.19.1). The
>> latest
>>      code is here in our Gtithub account *https://github.com/ICBI/CINdex
>>      <https://github.com/ICBI/CINdex> *
>>
>>      2)  I generated new ssh keys , and then added the ssh information from
>> my
>>      *id_rsa.pub* file in this link.
>>      https://git.bioconductor.org/BiocCredentials/account_activation/
>>
>>      3) I'm currently following the steps mentioned here:
>>      bioconductor.org/developers/how-to/git/sync-existing-repositories/.
>> *I have
>>      an error when I try git fetch*
>>
>>      #Configure the “remotes” of the GitHub clone. --- completed step
>>      git remote add upstream git using git.bioconductor.org:
>> packages/ICBI/CINdex.git
>>
>>      $ git remote -v
>>      origin https://github.com/ICBI/CINdex (fetch)
>>      origin https://github.com/ICBI/CINdex (push)
>>      upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (fetch)
>>      upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (push)
>>
>>      $ git fetch --all
>>      Fetching origin
>>      Fetching upstream
>>      FATAL: R any packages/ICBI/CINdex k.bhuvaneshwar DENIED by fallthru
>>      (or you mis-spelled the reponame)
>>      fatal: Could not read from remote repository.
>>
>>      Please make sure you have the correct access rights
>>      and the repository exists.
>>      error: Could not fetch upstream
>>
>>      Thanks,
>>      Krithika
>>      kb472 using georgetown.edu
>>
>>          [[alternative HTML version deleted]]
>>
>>      _______________________________________________
>>      Bioc-devel using r-project.org mailing list
>>      https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
> 	[[alternative HTML version deleted]]
>
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---
Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263



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