[Bioc-devel] Encountering Issues with Github sync

[Krithika Bhuvaneshwar]

Thank you for catching that !  That was very helpful

I have now completed Steps# 1 - 7 and Step # 9 from here:
*http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
<http://bioconductor.org/developers/how-to/git/sync-existing-repositories/>
*(I think Step # 8 does not apply to me)

I don't exactly understand what Step # 10 is. Is this what I should do , or
can I skip this ? Please advise.


*10. Repeat for the release branch, replacing master with the name of the
release branch, e.g., RELEASE_3_6. It may be necessary to create the
release branch in the local repository.*

git checkout RELEASE_13_3
 git merge upstream/RELEASE_13_3
 git merge origin/RELEASE_13_3
 git push upstream RELEASE_13_3
 git push origin RELEASE_13_3


Thanks,
Krithika



On Thu, Feb 25, 2021 at 12:33 PM Martin Morgan <mtmorgan.bioc using gmail.com>
wrote:

> The Bioconductor remote should not include 'ICBI,
>
>     git remote remove upstream
>     git remote add upstream git using git.bioconductor.org:packages/CINdex.git
>
> On 2/25/21, 11:40 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" <
> bioc-devel-bounces using r-project.org on behalf of kb472 using georgetown.edu> wrote:
>
>     Hello,
>
>     We are the package maintaines for the CINdex package.  We have made
> changes
>     in our package to address the build errors for the upcoming release.
> The
>     latest code is here in our Gtithub account *
> https://github.com/ICBI/CINdex
>     <https://github.com/ICBI/CINdex>  . *I'm trying to sync it with the
> BioC
>     Github repo, but encountering errors. Would appreciate some help
>
>     These are the steps I did:
>
>     1) Updated code so that there are no build errors. Updated version
>     information in DESCRIPTION File (changed from 1.19.0 to 1.19.1). The
> latest
>     code is here in our Gtithub account *https://github.com/ICBI/CINdex
>     <https://github.com/ICBI/CINdex> *
>
>     2)  I generated new ssh keys , and then added the ssh information from
> my
>     *id_rsa.pub* file in this link.
>     https://git.bioconductor.org/BiocCredentials/account_activation/
>
>     3) I'm currently following the steps mentioned here:
>     bioconductor.org/developers/how-to/git/sync-existing-repositories/.
> *I have
>     an error when I try git fetch*
>
>     #Configure the “remotes” of the GitHub clone. --- completed step
>     git remote add upstream git using git.bioconductor.org:
> packages/ICBI/CINdex.git
>
>     $ git remote -v
>     origin https://github.com/ICBI/CINdex (fetch)
>     origin https://github.com/ICBI/CINdex (push)
>     upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (fetch)
>     upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (push)
>
>     $ git fetch --all
>     Fetching origin
>     Fetching upstream
>     FATAL: R any packages/ICBI/CINdex k.bhuvaneshwar DENIED by fallthru
>     (or you mis-spelled the reponame)
>     fatal: Could not read from remote repository.
>
>     Please make sure you have the correct access rights
>     and the repository exists.
>     error: Could not fetch upstream
>
>     Thanks,
>     Krithika
>     kb472 using georgetown.edu
>
>         [[alternative HTML version deleted]]
>
>     _______________________________________________
>     Bioc-devel using r-project.org mailing list
>     https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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