[Bioc-devel] Encountering Issues with Github sync

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Thu Feb 25 18:33:15 CET 2021

The Bioconductor remote should not include 'ICBI,

    git remote remove upstream
    git remote add upstream git using git.bioconductor.org:packages/CINdex.git

On 2/25/21, 11:40 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" <bioc-devel-bounces using r-project.org on behalf of kb472 using georgetown.edu> wrote:


    We are the package maintaines for the CINdex package.  We have made changes
    in our package to address the build errors for the upcoming release. The
    latest code is here in our Gtithub account *https://github.com/ICBI/CINdex
    <https://github.com/ICBI/CINdex>  . *I'm trying to sync it with the BioC
    Github repo, but encountering errors. Would appreciate some help

    These are the steps I did:

    1) Updated code so that there are no build errors. Updated version
    information in DESCRIPTION File (changed from 1.19.0 to 1.19.1). The latest
    code is here in our Gtithub account *https://github.com/ICBI/CINdex
    <https://github.com/ICBI/CINdex> *

    2)  I generated new ssh keys , and then added the ssh information from my
    *id_rsa.pub* file in this link.

    3) I'm currently following the steps mentioned here:
    bioconductor.org/developers/how-to/git/sync-existing-repositories/. *I have
    an error when I try git fetch*

    #Configure the “remotes” of the GitHub clone. --- completed step
    git remote add upstream git using git.bioconductor.org:packages/ICBI/CINdex.git

    $ git remote -v
    origin https://github.com/ICBI/CINdex (fetch)
    origin https://github.com/ICBI/CINdex (push)
    upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (fetch)
    upstream git using git.bioconductor.org:packages/ICBI/CINdex.git (push)

    $ git fetch --all
    Fetching origin
    Fetching upstream
    FATAL: R any packages/ICBI/CINdex k.bhuvaneshwar DENIED by fallthru
    (or you mis-spelled the reponame)
    fatal: Could not read from remote repository.

    Please make sure you have the correct access rights
    and the repository exists.
    error: Could not fetch upstream

    kb472 using georgetown.edu

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