[Bioc-devel] Git recognizes me but denies access

[Kern, Lori]

I don't see any changes on the RELEASE_3_14 branch.  Please make sure to push to the RELEASE_3_14 branch as described in
http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/

Pushing to the master branch will not have the changes reflected at:
http://bioconductor.org/checkResults/release/bioc-LATEST/destiny/
They need to be on the RELEASE_3_14 branch.

Your package was deprecated in 3.14 and needs to be corrected there before we will add it back into the devel (master) branch of Bioconductor for 3.15.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Philipp A. <flying-sheep using web.de>
Sent: Sunday, December 12, 2021 7:49 AM
To: Vincent Carey <stvjc using channing.harvard.edu>
Cc: Carsten Marr <carsten.marr using helmholtz-muenchen.de>; Bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Git recognizes me but denies access

BiocCheck is broken. The check for vignette sources doesn�t find destiny�s
.ipynb files. Please fix!

https://secure-web.cisco.com/1blPXZJ7d5nNNCosvDpJZn9i0Jw8WdrvotaNHQh3akKRVeMlfCfvDKMTV-i7KScFzy-HwnY_cjrVDFdkE1EDjPE0QsG5Huyc96f0UPas7naAVcZCCOKJMJqLtvyDpOpZKnSCyUMpFhwroM3rhQRL80GZsVumbPNXeuPzif8ecD0l3PmmEeXsaNWKQO69-VSkjLfuLUluWZKIz8P1smFhK642oxxFPTMdaReogAHkzvHWbaSK87d59Vh64Zov9QPxauXeimRZCjBSbjksdrZRiaH1KV6grVzXRCFzoU9PZ449i1OaI9-oaEqWaVlqS6jBB/https%3A%2F%2Fgithub.com%2FBioconductor%2FBiocCheck%2Fblob%2F554a92e5de4d738937cf7c06bc240f317c728753%2FR%2Futil.R%23L527-L532

Am So., 12. Dez. 2021 um 12:49 Uhr schrieb Philipp A. <flying-sheep using web.de>:

> I�ve been on holidays! Now that I�m back I found that I can finally commit
> again.
>
> I think the easiest fix was to just switch to HTML vignettes, then destiny
> is no longer dependent on Bioconductor�s LaTeX environment staying stable.
> Let�s see in the next build if it worked.
>
> If not, I�d like some support. The 24 hour turnaround of the build bots is
> too slow for incremental changes.
>
> Am Fr., 10. Dez. 2021 um 18:59 Uhr schrieb Vincent Carey <
> stvjc using channing.harvard.edu>:
>
>> How are we doing with this?  Can destiny be maintained?  Do we need more
>> git assistance?
>> I am told the package is not passing check in 3.14.
>>
>> On Thu, Nov 18, 2021 at 4:24 AM Philipp A. <flying-sheep using web.de> wrote:
>>
>>> My addresses are phil.angerer using gmail.com (not philipp) and
>>> flying-sheep using web.de.
>>>
>>> I�ll add a key as soon as I�m able to log in.
>>>
>>> Am Mo., 15. Nov. 2021 um 15:56 Uhr schrieb Nitesh Turaga <
>>> nturaga.bioc using gmail.com>:
>>>
>>> > You have to activate the account at
>>> > https://git.bioconductor.org/BiocCredentials/account_activation. Set a
>>> > password and add Ssh keys.
>>> >
>>> > Once again, the email you are trying to activate is '
>>> > philipp.angerer using gmail.com�.
>>> >
>>> > The problem seems to be non-matching key pairs. Add new SSH keys.
>>> >
>>> > Best,
>>> >
>>> > Nitesh
>>> >
>>> >
>>> > Nitesh Turaga
>>> > Scientist II, Department of Data Science,
>>> > Bioconductor Core Team Member
>>> > Dana Farber Cancer Institute
>>> >
>>> > > On Nov 15, 2021, at 9:54 AM, Nitesh Turaga <nturaga.bioc using gmail.com>
>>> > wrote:
>>> > >
>>> > > Hi Philipp,
>>> > >
>>> > > The email address that is registered to BiocCredentials right now is
>>> '
>>> > philipp.angerer using gmail.com'. It doesn�t look like an institutional
>>> email
>>> > address.
>>> > >
>>> > > Could you please confirm the email change to flying-sheep using web.de ??
>>> > >
>>> > > Best,
>>> > >
>>> > > Nitesh
>>> > >
>>> > > Nitesh Turaga
>>> > > Scientist II, Department of Data Science,
>>> > > Bioconductor Core Team Member
>>> > > Dana Farber Cancer Institute
>>> > >
>>> > >> On Nov 15, 2021, at 2:36 AM, Carsten Marr <
>>> > carsten.marr using helmholtz-muenchen.de> wrote:
>>> > >>
>>> > >> confirmed!
>>> > >>
>>> > >>
>>> > >> best,
>>> > >> c
>>> > >>
>>> > >>
>>> > >>
>>> > >>> Am 13.11.2021 um 15:56 schrieb Philipp A. <flying-sheep using web.de>:
>>> > >>>
>>> > >>> I no longer have control of this email address.
>>> > >>>
>>> > >>> Please add the one I�m writing from to the account.
>>> > >>>
>>> > >>> My supervisor (CC) from when I was at the institution can confirm
>>> that
>>> > I�m the same person.
>>> > >>>
>>> > >>> Best, Phil
>>> > >>>
>>> > >>> Am Di., 9. Nov. 2021 um 16:24 Uhr schrieb Nitesh Turaga <
>>> > nturaga.bioc using gmail.com>:
>>> > >>> Dear Phil,
>>> > >>>
>>> > >>> Please activate your account at
>>> > https://git.bioconductor.org/BiocCredentials/account_activation. Add
>>> new
>>> > SSH keys, because it�s possible you are not using the correct
>>> key-pairs.
>>> > >>>
>>> > >>> Nothing on our end seems out of place.
>>> > >>>
>>> > >>> The FAQ section from #13 onwards has other debugging options as
>>> well,
>>> > https://bioconductor.org/developers/how-to/git/faq/.
>>> > >>>
>>> > >>> Best,
>>> > >>>
>>> > >>> Nitesh
>>> > >>>
>>> > >>>
>>> > >>> Nitesh Turaga
>>> > >>> Scientist II, Department of Data Science,
>>> > >>> Bioconductor Core Team Member
>>> > >>> Dana Farber Cancer Institute
>>> > >>>
>>> > >>>> On Nov 8, 2021, at 12:23 PM, Philipp A. <flying-sheep using web.de>
>>> wrote:
>>> > >>>>
>>> > >>>> Hi,
>>> > >>>>
>>> > >>>> My package (destiny) has been deprecated because Bioconductor�s
>>> LaTeX
>>> > >>>> environment keeps changing and breaking my docs.
>>> > >>>>
>>> > >>>> I�m trying to fix it once again, but I get:
>>> > >>>>
>>> > >>>> $ git push upstream masterFATAL: W any packages/destiny p.angerer
>>> > >>>> DENIED by fallthru
>>> > >>>>
>>> > >>>> *Please note that this isn�t covered in the FAQ*:
>>> > >>>>
>>> > >>>> �p.angerer� indicates that it recognizes me, but still doesn�t
>>> allow
>>> > me to
>>> > >>>> push commits.
>>> > >>>>
>>> > >>>> Best, Phil
>>> > >>>>
>>> > >>>>      [[alternative HTML version deleted]]
>>> > >>>>
>>> > >>>> _______________________________________________
>>> > >>>> Bioc-devel using r-project.org mailing list
>>> > >>>> https://secure-web.cisco.com/1mXtrD9l6sg9vnOzN1Ne7RxKKiNzSlPyryAIH_kmh3osGr98Y9SPchTMERJBQa7CKvZLhqO2GLNhrWpOx_GsbSfvQ1Lsxk1OV0ZWfyD37Ae2MaLg235NVFsYLg7pPio7iBrqAiJCkKngHHSLZO8QSpejmVMywsFZTWuCsGY_Q15SAeljGWews46SwPLNqphEiXcCA4g3f24mXmApsIijFx-sK5Ah5Br7_jm9WGPLXDYVjT6v1So9Gto9oqQr9zpxUQbIeSvgDoY6pk2iRkKRhRWm4m1UmZBJF6QEqBf0wBt6DX7nKUgFfcDq314ORsszx/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> > >>>
>>> > >>
>>> > >> -------------------------------------------
>>> > >> Carsten Marr
>>> > >> +49 89 3187 2158
>>> > >> AIH Institute of AI for Health
>>> > >> Helmholtz Zentrum M�nchen
>>> > >> http://secure-web.cisco.com/1X22qocdL8GfP1rZ9uSYjRZ9Fq0oPFBRe4PDliMoH5ublAZP_E9VX14M3D0z0kYJB3mBo_lUjqvcwB3iFxaXLlRxedbtUYQb1vOBbLcP1galeQKG9I_BOynPTwV4gRNG3ZjVchpqrpMpH_EWrMOff263smdaoNBriQnNX8U29HeYhlWP3Fg66q3Qo4vk3oi7TyuanlxV_vOKDdQTgCLB-HkldMTa4n02zpp780kbayIqImupJ9nbwYZDz9WeZ_I_2wbz1Tpv88rWUgWBwAKZQG2uhQSAjpsqLz92H4a6KZR9QDeBcvOeLXWfXEBSL8F_n/http%3A%2F%2Fwww.helmholtz-muenchen.de%2Faih%2Findex.html
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >> Helmholtz Zentrum M�nchen
>>> > >> Deutsches Forschungszentrum f�r Gesundheit und Umwelt (GmbH)
>>> > >> Ingolst�dter Landstr. 1
>>> > >> 85764 Neuherberg
>>> > >> http://secure-web.cisco.com/1Yojw-jZLlEjMwOS5mLEFOufYAFidkMMPbm1JPqvog7OjWKkcudneCDRgW9G5jsYvw_l9KsvCkbuwEAauZkUTeFR2PIfuM0YiYH2cWXSE7m5NHFXpfDHgitnvt2i2eC4WyvcO0rCG-ukQKzwrm19OGcQKwj3WV-ftyVARBVgT-_EnqBNq9QT8YMtgN2jfMQ2799-16qOYZWA2xcI_8Jo-NVwgbyR8CqSjbodh5izS4soPNbQBcQIaRmsK5s6CuOM9HKrg-mEc_LB-dh037--E2Ex4PfMqjM68abk7y7_r9PfijaUAr4U337iQRzJ5xCt1/http%3A%2F%2Fwww.helmholtz-muenchen.de
>>> > >> Aufsichtsratsvorsitzende: MinDir.in Prof. Dr. Veronika von Messling
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>>> > G�nther
>>> > >> Registergericht: Amtsgericht M�nchen HRB 6466
>>> > >> USt-IdNr: DE 129521671
>>> > >>
>>> > >
>>> >
>>> >
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>> https://secure-web.cisco.com/1mXtrD9l6sg9vnOzN1Ne7RxKKiNzSlPyryAIH_kmh3osGr98Y9SPchTMERJBQa7CKvZLhqO2GLNhrWpOx_GsbSfvQ1Lsxk1OV0ZWfyD37Ae2MaLg235NVFsYLg7pPio7iBrqAiJCkKngHHSLZO8QSpejmVMywsFZTWuCsGY_Q15SAeljGWews46SwPLNqphEiXcCA4g3f24mXmApsIijFx-sK5Ah5Br7_jm9WGPLXDYVjT6v1So9Gto9oqQr9zpxUQbIeSvgDoY6pk2iRkKRhRWm4m1UmZBJF6QEqBf0wBt6DX7nKUgFfcDq314ORsszx/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>
>>
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