[Bioc-devel] CDI package - Error in Windows system

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Tue Dec 7 14:23:59 CET 2021

This is an ERROR on our end as previously reported in the mailing list.  We pushed up a fix but it has not yet propagated to the windows builder. We will investigate why but in the meantime you can ignore this ERROR.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Jiyuan Fang <jfanglovestats using gmail.com>
Sent: Tuesday, December 7, 2021 8:15 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] CDI package - Error in Windows system

Dear Sir/Madam,

Hope this email finds you well. May I ask about an error in the Bioconductor build report (http://bioconductor.org/spb_reports/CDI_buildreport_20211206165809.html )? I pushed CDI package version 0.99.2 to Bioconductor yesterday. An error was reported for Windows server as the following:

* Checking if DESCRIPTION is well formatted...
Warning in read.dcf(file.path(package_dir, "DESCRIPTION")) :
  cannot open compressed file 'C:\Users\pkgbuild\AppData\Local\Temp\Rtmp2zGczl\file1a2464df3aef/CDI/DESCRIPTION', probable reason 'No such file or directory'
    * ERROR: DESCRIPTION is malformed.
cannot open the connection

It looks the backslashes and forward slashes in the path are not consistent. I am not sure how to fix this problem. I ran the read.dcf() function in my own laptop and it works without errors. Do you have any advice?


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