[Bioc-devel] biocLite not installing

[Diaz, Josue E.]

> BiocManager::install("biocLite")Bioconductor version 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installing package(s) 'biocLite'Installation path not writeable, unable to update packages: broom, callr, cli, cpp11, dbplyr,  diffobj, pkgload, processx, reprex, survival, tinytex, vctrsWarning message:package �biocLite� is not available for this version of RA version of this package for your version of R might be available elsewhere,see the ideas athttps://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

> source("https://bioconductor.org/biocLite.R")
 Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install
> biocLite(pkgs=c("Biobase", "IRanges", "AnnotationDbi"),   suppressUpdates=FALSE, suppressAutoUpdate=FALSE, siteRepos=character(), ask=TRUE, ...)Error in biocLite(pkgs = c("Biobase", "IRanges", "AnnotationDbi"), suppressUpdates = FALSE,  :   could not find function "biocLite"

 > BiocManager::install()Bioconductor version
 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path not writeable, unable to update packages: broom, callr, cli, cpp11, dbplyr,  diffobj, pkgload, processx, reprex, survival, tinytex, vctrs
> BiocManager::install()Bioconductor
version 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path not writeable, unable to update packages: broom, callr, cli, cpp11, dbplyr,  diffobj, pkgload, processx, reprex, survival, tinytex, vctrs

Josue Diaz
Graduate Research Fellow | Dr. Leah McHale Lab
Center for Applied Plant SciencesTranslational Plant Sciences Graduate Program

326 Kottman Hall, 2021 Coffey Road, Columbus, OH 43212


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