[Bioc-devel] biocLite not installing

[Vincent Carey]

Dear Dr Diaz:

This email list is for development of software in Bioconductor.  Questions
about basic functionality should go to
support.bioconductor.org -- please visit that site and make an account.

For your specific question please note the message


> source("https://bioconductor.org/biocLite.R")
 Error: With R version 3.5 or greater, install Bioconductor packages using
BiocManager; see https://bioconductor.org/install

biocLite is not used with the version of R you are using.  If you have
further questions please post
to support.bioconductor.org.

Thanks!



On Fri, Apr 16, 2021 at 6:30 AM Diaz, Josue E. <diaz.335 using buckeyemail.osu.edu>
wrote:

> > BiocManager::install("biocLite")Bioconductor version 3.12 (BiocManager
> 1.30.12), R 4.0.4 (2021-02-15)Installing package(s) 'biocLite'Installation
> path not writeable, unable to update packages: broom, callr, cli, cpp11,
> dbplyr,  diffobj, pkgload, processx, reprex, survival, tinytex,
> vctrsWarning message:package ‘biocLite’ is not available for this version
> of RA version of this package for your version of R might be available
> elsewhere,see the ideas athttps://
> cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
>
> > source("https://bioconductor.org/biocLite.R")
>  Error: With R version 3.5 or greater, install Bioconductor packages using
> BiocManager; see https://bioconductor.org/install
> > biocLite(pkgs=c("Biobase", "IRanges", "AnnotationDbi"),
>  suppressUpdates=FALSE, suppressAutoUpdate=FALSE, siteRepos=character(),
> ask=TRUE, ...)Error in biocLite(pkgs = c("Biobase", "IRanges",
> "AnnotationDbi"), suppressUpdates = FALSE,  :   could not find function
> "biocLite"
>
>  > BiocManager::install()Bioconductor version
>  3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path not
> writeable, unable to update packages: broom, callr, cli, cpp11, dbplyr,
> diffobj, pkgload, processx, reprex, survival, tinytex, vctrs
> > BiocManager::install()Bioconductor
> version 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path
> not writeable, unable to update packages: broom, callr, cli, cpp11,
> dbplyr,  diffobj, pkgload, processx, reprex, survival, tinytex, vctrs
>
> Josue Diaz
> Graduate Research Fellow | Dr. Leah McHale Lab
> Center for Applied Plant SciencesTranslational Plant Sciences Graduate
> Program
>
> 326 Kottman Hall, 2021 Coffey Road, Columbus, OH 43212
>
>
>         [[alternative HTML version deleted]]
>
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