[Bioc-devel] Adding new "DifferentialDNA3DStructure" to biocViews

[Kern, Lori]

DifferentialDNA3DStructure has been added to the devel list of biocViews terms and will be carried through in future releases.  It will be available once biocViews version 1.59.3 propagates on the build system

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Tim Triche, Jr. <tim.triche using gmail.com>
Sent: Saturday, April 3, 2021 10:07 PM
To: Matthias Zytnicki <matthias.zytnicki using inrae.fr>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Adding new "DifferentialDNA3DStructure" to biocViews

Seconded

HiC isn’t even very good at this 😁

--t

> On Apr 3, 2021, at 7:05 AM, Matthias Zytnicki <matthias.zytnicki using inrae.fr> wrote:
>
> Dear everyone,
>
>
> First please accept my apologies if my request is not appropriate here.
>
> If so, please suggest me how to proceed.
>
>
> I would like to suggest adding a new item in the biocViews:
>
> ===
>
> BiologicalQuestion -> DifferentialDNA3DStructure;
>
> ===
>
> The rationale is:
>
>  *   There are already several biocViews starting with "Differential": DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, DifferentialSplicing.
>  *   The biocViews "DNA3DStructure" already exists.
>  *   I can spot at least 4 bioC package that would fit in this biocViews: diffHic, HiCcompare, multiHiCcompare, TADCompare, plus the ones I am not aware of (and I obviously would like to add one in a near future).
>  *   I expect several new packages in the fields: differential interactions, differential loops, differential TADs, etc.
>
> The new biocView could be "DifferentialHiC", but I find it a bit too restrictive.
>
> Best regards,
>
> Matthias.
>
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