[Bioc-devel] Pushing to Bioconductor repo gives errors

[Alina Selega]

Sorry, looks like the error got mangled. I pasted it in this gist:
https://gist.github.com/alinaselega/f5c4f724309211cc4a5bedd2a05bfd1e

Thanks,
Alina

On Sun, 6 Sep 2020 at 12:36, Alina Selega <alina.selega using gmail.com> wrote:

> Hi,
>
> I wanted to re-add a license file to my repository which got misplaced (no
> changes to code). I followed the instructions in this link (
> https://bioconductor.org/developers/how-to/git/pull-upstream-changes/) to
> pull upstream changes.
>
> I then followed these instructions (
> https://bioconductor.org/developers/how-to/git/push-to-github-bioc/). I
> successfully pushed the file to my Github repo, but when I reached step 6
> to push the changes to Bioconductor, I got the following errors:
>
> ```
> Counting objects: 3, done.
>                                       Delta compression using up to 8
> threads.
> Compressing objects: 100% (3/3), done.
>                         Writing objects: 100% (3/3), 12.11 KiB | 6.05
> MiB/s, done.                                  Total 3 (delta 1), reused 1
> (delta 0)
>     remote: fatal: this operation must be run in a work tree
>                         remote: ERROR:root:Exception: Command '['git',
> 'rev-parse', '--show-toplevel']' returned non-zero exit status 128
> remote: ERROR:root:local variable 'package_name' referenced before
> assignment
> remote: Note: failed to update RSS feed;git repository updated
> successfully.        To git.bioconductor.org:packages/BUMHMM.git
>                                           bbafa73..160b7a7  master -> master
> ```
>
> It appears that the upstream updated successfully but can you advise about
> the errors?
>
> Thank you,
> Alina
>
>

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