[Bioc-devel] Pushing to Bioconductor repo gives errors

Alina Selega @||n@@@e|eg@ @end|ng |rom gm@||@com
Sun Sep 6 18:36:41 CEST 2020


I wanted to re-add a license file to my repository which got misplaced (no
changes to code). I followed the instructions in this link (
https://bioconductor.org/developers/how-to/git/pull-upstream-changes/) to
pull upstream changes.

I then followed these instructions (
https://bioconductor.org/developers/how-to/git/push-to-github-bioc/). I
successfully pushed the file to my Github repo, but when I reached step 6
to push the changes to Bioconductor, I got the following errors:

Counting objects: 3, done.
                                    Delta compression using up to 8
Compressing objects: 100% (3/3), done.
                        Writing objects: 100% (3/3), 12.11 KiB | 6.05
MiB/s, done.                                  Total 3 (delta 1), reused 1
(delta 0)
    remote: fatal: this operation must be run in a work tree
                        remote: ERROR:root:Exception: Command '['git',
'rev-parse', '--show-toplevel']' returned non-zero exit status 128
remote: ERROR:root:local variable 'package_name' referenced before
remote: Note: failed to update RSS feed;git repository updated
successfully.        To git.bioconductor.org:packages/BUMHMM.git
                                        bbafa73..160b7a7  master -> master

It appears that the upstream updated successfully but can you advise about
the errors?

Thank you,

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