[Bioc-devel] Maintenance of MetaNeighbor package

[Nitesh Turaga]

Hi Everyone,

Thank you for your prompt response. Stephan should be able to access the package as soon as he adds SSH keys to the server. I will be sending Stephan a private email regarding his credentials to access the Bioconductor git credentials application.

Best,

Nitesh 

> On Sep 3, 2020, at 10:47 PM, Manthan Shah <manthanshah27.92 using gmail.com> wrote:
> 
> Hi Nitesh,
> 
> I agree Stephan should have the developer rights required to make changes to the package. Please let me know if there are any actions required from my side.
> 
> Best,
> Manthan
> 
> On Thu, Sep 3, 2020 at 9:10 PM Jesse Gillis <jesse.gillis using gmail.com <mailto:jesse.gillis using gmail.com>> wrote:
> Hi Nitesh,
> 
> 
> 
> That is confirmed for both me and Manthan (who was a computational
> 
> science developer in my lab).
> 
> 
> 
> Cheers,
> 
> 
> 
> Jesse
> 
> 
> 
> On Thu, Sep 3, 2020 at 10:00 AM Stephan Fischer <stephischer using gmail.com <mailto:stephischer using gmail.com>> wrote:
> 
> >
> 
> > Hi Jesse, Manthan, Nitesh,
> 
> >
> 
> > I wrote an e-mail earlier this week to Bioconductor support to take over maintenance of the MetaNeighbor package. Nitesh nicely offered to help me with the task, but would like to make sure that everyone agrees first. Can you please briefly confirm the change by answering this email?
> 
> >
> 
> > Thanks everyone,
> 
> >
> 
> > Best,
> 
> >
> 
> > Stephan
> 
> >
> 
> > On 03/09/2020 15:45, Nitesh Turaga wrote:
> 
> >
> 
> > Hi Stephan,
> 
> >
> 
> > First, I’d like you to cc Dr. Jesse Gillis and also Manthan so we know that everyone is in agreement.
> 
> >
> 
> > I can help you with the permissions on the Bioconductor repo. Before you get permissions you will only be able to fetch using the HTTP protocol, i.e
> 
> >
> 
> > git remote set-url upstream https://git.bioconductor.org/packages/MetaNeighbor <https://git.bioconductor.org/packages/MetaNeighbor>
> 
> >
> 
> > git fetch —all
> 
> >
> 
> > Once you get the permissions you can modify the remote to use the SSH protocol instead.
> 
> >
> 
> > Best,
> 
> >
> 
> > Nitesh
> 
> >
> 
> > On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer using gmail.com <mailto:stephischer using gmail.com>> wrote:
> 
> >
> 
> > Hi,
> 
> >
> 
> > My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis
> 
> > and I'm currently maintaining the internal version of the MetaNeighbor
> 
> > package. The Bioconductor version of the package was previously
> 
> > maintained by Manthan Shah, who left the lab about a year ago. I would
> 
> > like to take over the maintenance of the MetaNeighbor package on
> 
> > Bioconductor and sync it with our internal version. Here is what I would
> 
> > like to do:
> 
> >
> 
> >  * Change of Github repository: Manthan hosted his own version of
> 
> >    MetaNeighbor on a personal Github to sync with Bioconductor. I would
> 
> >    rather use the Gillis lab Github instead. If I understand correctly,
> 
> >    this should not be too much of an issue, since the two repositories
> 
> >    have a shared history (Manthan forked the Gillis lab repo).
> 
> >  * Change of permission: I set the bioconductor URL upstream of the
> 
> >    Gillis lab repo, but when I try to fetch, I get a warning that I
> 
> >    don't have the right permissions. At a glance I could not find how
> 
> >    the permission system works. Would it be possible to update
> 
> >    permissions so that I (and maybe other lab members) can access the
> 
> >    Bioconductor repo?
> 
> >
> 
> > Thanks for your help!
> 
> >
> 
> > Best,
> 
> >
> 
> > Stephan
> 
> >
> 
> >
> 
> > [[alternative HTML version deleted]]
> 
> >
> 
> > _______________________________________________
> 
> > Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org> mailing list
> 
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
> 
> >
> 
> >
> 
> -- 
> Regards,
> Manthan Shah


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