[Bioc-devel] Pushing to Bioconductor repo gives errors

[Nitesh Turaga]

Your push went through. This is a different issue. I’ll look into it tomorrow.

Thanks,

Nitesh

> On Sep 6, 2020, at 12:44 PM, Alina Selega <alina.selega using gmail.com> wrote:
> 
> Sorry, looks like the error got mangled. I pasted it in this gist:
> https://gist.github.com/alinaselega/f5c4f724309211cc4a5bedd2a05bfd1e
> 
> Thanks,
> Alina
> 
> On Sun, 6 Sep 2020 at 12:36, Alina Selega <alina.selega using gmail.com> wrote:
> 
>> Hi,
>> 
>> I wanted to re-add a license file to my repository which got misplaced (no
>> changes to code). I followed the instructions in this link (
>> https://bioconductor.org/developers/how-to/git/pull-upstream-changes/) to
>> pull upstream changes.
>> 
>> I then followed these instructions (
>> https://bioconductor.org/developers/how-to/git/push-to-github-bioc/). I
>> successfully pushed the file to my Github repo, but when I reached step 6
>> to push the changes to Bioconductor, I got the following errors:
>> 
>> ```
>> Counting objects: 3, done.
>>                                      Delta compression using up to 8
>> threads.
>> Compressing objects: 100% (3/3), done.
>>                        Writing objects: 100% (3/3), 12.11 KiB | 6.05
>> MiB/s, done.                                  Total 3 (delta 1), reused 1
>> (delta 0)
>>    remote: fatal: this operation must be run in a work tree
>>                        remote: ERROR:root:Exception: Command '['git',
>> 'rev-parse', '--show-toplevel']' returned non-zero exit status 128
>> remote: ERROR:root:local variable 'package_name' referenced before
>> assignment
>> remote: Note: failed to update RSS feed;git repository updated
>> successfully.        To git.bioconductor.org:packages/BUMHMM.git
>>                                          bbafa73..160b7a7  master -> master
>> ```
>> 
>> It appears that the upstream updated successfully but can you advise about
>> the errors?
>> 
>> Thank you,
>> Alina
>> 
>> 
> 
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