[Bioc-devel] NanoporeRNASeq not found in the devel Bioc3.12 package list

[CHEN Ying]

Hi Martin,

Thanks for answering my queries. Sorry about this, but there seems to have another issue related to NanoporeRNASeq package now, where on Windows, there is an error saying "database is locked" when trying to load data from ExperimentHub in building the vignette. I am not sure what I am supposed to do.

Please advise on the matter.

Thank you
Regards,
CHEN Ying
________________________________
From: Martin Morgan <mtmorgan.bioc using gmail.com>
Sent: Saturday, 24 October 2020 10:13 PM
To: CHEN Ying <chen_ying using gis.a-star.edu.sg>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] NanoporeRNASeq not found in the devel Bioc3.12 package list

I believe that NanoporeNSeq was added to the experiment data build 'manifest' after the most recent build (on Mondays and Thursdays) started, so it will not be available until Monday experiment data package builds are complete, and bambu has been built with those packages available -- I think this will be on the build report available Tuesday afternoon, US Eastern time zone.

Martin

On 10/23/20, 11:37 PM, "Bioc-devel on behalf of CHEN Ying" <bioc-devel-bounces using r-project.org on behalf of chen_ying using gis.a-star.edu.sg> wrote:

    Hello,

    I received an email saying our package bambu built in Bioc3.12 produce errors, which I found was due to the dependent ExperimentData package NanoporeRNASeq was not built in the Bioc3.12 package list. However, when I check the Bioc3.13 package list, both bambu and NanoporeRNASeq were built successfully.

    I was wondering will NanoporeRNASeq still be included in the Bioc3.12 version? If so, when will the status be reflected on Bioc3.12 package list?

    Thank you
    Regards
    CHEN Ying
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