[Bioc-devel] Can we still patch a broken package in 3_11

[Christian Mertes]

Dear Lori,

thank you for the info. I kind of expected it. The master branch is
already updated.

Best,
Christian

On Wed, 2020-10-21 at 11:49 +0000, Kern, Lori wrote:
> The RELEASE_3_11 branch is frozen and will not be updated.  Please
> update in your current master branch so the changes will be included
> in the upcoming release. 
> 
> thank you. 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Christian Mertes <mertes using in.tum.de>
> Sent: Tuesday, October 20, 2020 2:14 PM
> To: BioC-devel <bioc-devel using r-project.org>
> Subject: [Bioc-devel] Can we still patch a broken package in 3_11
>  
> Dear Bioc team,
> 
> I'm very sorry to ask you this, since it is release time and you
> fixed
> already the 3_11 branch.
> 
> But during the last 3 days, Nature decided to change their URLs and
> hence it broke our OUTRIDER package and the last build of 3_11.
> 
> http://secure-web.cisco.com/1Op3qvXHQkP7qE9DHMlHN42Jq-0qP8U0QKcsCcMCxpDW-TwyIhGrufu6_3D67J3imElOWeLf4BB8aNObwc2Uvk7r4EDLEga2vT2dqoN9JWHY8mf1HGxH9ubnBLEqoxcHlldNz3MXjyaVwkat5J7J4kKzehq4o2MsOiwHiPyfVQplqrY04sqAqjBqgMa9TSTVDZrewbmVfKlXi_GGy9HHmyuDehN0VZ2c7tLqjh_o7agVcwF7RGKtI1l-9w4Uem1XvN3Ljjd8MVYMKeUKj4kJU5Awv_G5fGxGjQO7z9w2L10LhWZA0BqeMUW5ABdiJ_vdH/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FOUTRIDER%2F
> 
> Would it be still possible to patch it to make it work again? I can
> understand if the branch 3_11 is fixed and you do not want to touch
> it
> again.
> 
> I attached the patch if you decide to change it. 
> 
> Best,
> Christian
> 
> 
-- 

Christian Mertes | PhD Student / Lab Administrator

Gagneur Lab | Computation Molecular Medicine
I29 - Department of Informatics
Technical University of Munich
Boltzmannstr. 3, 85748, Garching, Germany

mertes using in.tum.de | https://in.tum.de/gagneurlab/