[Bioc-devel] Can we still patch a broken package in 3_11

[Kern, Lori]

The RELEASE_3_11 branch is frozen and will not be updated.  Please update in your current master branch so the changes will be included in the upcoming release.

thank you.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Christian Mertes <mertes using in.tum.de>
Sent: Tuesday, October 20, 2020 2:14 PM
To: BioC-devel <bioc-devel using r-project.org>
Subject: [Bioc-devel] Can we still patch a broken package in 3_11

Dear Bioc team,

I'm very sorry to ask you this, since it is release time and you fixed
already the 3_11 branch.

But during the last 3 days, Nature decided to change their URLs and
hence it broke our OUTRIDER package and the last build of 3_11.

http://secure-web.cisco.com/1Op3qvXHQkP7qE9DHMlHN42Jq-0qP8U0QKcsCcMCxpDW-TwyIhGrufu6_3D67J3imElOWeLf4BB8aNObwc2Uvk7r4EDLEga2vT2dqoN9JWHY8mf1HGxH9ubnBLEqoxcHlldNz3MXjyaVwkat5J7J4kKzehq4o2MsOiwHiPyfVQplqrY04sqAqjBqgMa9TSTVDZrewbmVfKlXi_GGy9HHmyuDehN0VZ2c7tLqjh_o7agVcwF7RGKtI1l-9w4Uem1XvN3Ljjd8MVYMKeUKj4kJU5Awv_G5fGxGjQO7z9w2L10LhWZA0BqeMUW5ABdiJ_vdH/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FOUTRIDER%2F

Would it be still possible to patch it to make it work again? I can
understand if the branch 3_11 is fixed and you do not want to touch it
again.

I attached the patch if you decide to change it.

Best,
Christian


--
Christian Mertes | PhD Student / Lab Administrator

Gagneur Lab | Computation Molecular Medicine
I29 - Department of Informatics
Technical University of Munich
Boltzmannstr. 3, 85748, Garching, Germany

mertes using in.tum.de | https://secure-web.cisco.com/1gZBNrSCRhNNJ804_XiApkCQw9dd1adZ-xizYiCYxn1zIdQGPkQuXp9pXiG5bjCt8CAJ1TfvhleMD_IzSmgsfEdBkzZzfTrAbv1SYyvcyfihUgKxv7qiluNX6Lpk_gI8Czm_0gm1V7681HFbw5-KLIdcBrIBF0WLAMSCVxp40KX93LgZSSlphBZZbw9yg5FXMI91Tulg-HycJnsIlzcpIMaJ-vefMAWZ6vHI1Hdw1yGFWp-HlvAg3jHN3dyTNAYr1MQPmKLdXBMRvmHb4WqiYK42pcGfw4Z-USwCIbhJd9hLfNfwdB01GdKh1P2xAKmn5/https%3A%2F%2Fin.tum.de%2Fgagneurlab%2F



_______________________________________________
Bioc-devel using r-project.org mailing list
https://secure-web.cisco.com/1ydq-3hN-WKVb0GYirLbsm81wEzAhZkYrW8R-p5nFlEHE162ZErvlDpRi8tf9IfHI73ASrwMVhzj05aH_K5pUl2GI96NvFhPTjPcg6v7pSnWlliimpgTErxpYq_MFwwU8YJELYmvSbFENmMvEvR1NA6u_ad_jELxhrM1GReyy0ukXpH4PcceB4b5kzwmnGxIDESwSlQ-93hUEI-IgSPu5vkRJmPtl4sfelLcw_ukbsBJXUm3rCFKUSkPVjtVzo6TcJ1tBpOJaK62MEKSbegdObxYVOdWsBDXL_rJc9BNex7_qHLb51K_6MCmWt2_seizQ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]