[Bioc-devel] Warning: 'rgl_init' failed

[Pages, Herve]

Hi Fernando,

This is a warning only and is on our side (i.e. it's an issue with how 
our Mac builders are set up). It can safely be ignored.

Cheers,
H.


On 1/7/20 23:58, Fernando Pérez Sanz wrote:
> Dear Bioc-devel
> 
> I have obtained the following warning by building binaries in celaya2 OS
> X 10.11.6 The Captain/x86_64,
> in windows works fine:
> 
> ** byte-compile and prepare package for lazy loading
> Warning in rgl.init(initValue, onlyNULL) :
>     RGL: GLX extension missing on server
> Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> Warning in rgl.init(initValue, onlyNULL) :
>     RGL: GLX extension missing on server
> Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> Warning in rgl.init(initValue, onlyNULL) :
>     RGL: GLX extension missing on server
> Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
> 
> 
> My yaml section into vignette:
> 
> 
> ---
> title: "Clustering time series data with tscR"
> subtitle: "A R package to cluster time series data, base on slope and Fréchet distance"
> author:
> - Pérez-Sanz, Fernando. Murcian Institute of biomedical research
> - Riquelme-Pérez, Miriam. CNRS - CEA, Univ. Paris-Saclay. MIRCen
> output:
>     prettydoc::html_pretty:
>       theme: hpstr
>       highlight: github
>       toc: true
> vignette: >
>     %\VignetteIndexEntry{tscR}
>     %\VignetteEncoding{UTF-8}
>     %\VignetteEngine{knitr::rmarkdown}
> editor_options:
>     chunk_output_type: console
> ---
> 
> could someone help me?
> 
> Thanks
> 
> Fernando
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=BBeIeNM9o_ctlmNKk4lUxZh0nCqo456Lk8KO1LcCY7M&s=HbWnth9FZ6dgOQX3WwBPo4NZz3yHMZj2ngmZFLNCFpU&e=
> 

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319