[Bioc-devel] Deleting netDx.examples package from BioC

[Shraddha Pai]

Hi Martin,
Great, thank you. I will set the number of cores to one for the examples
(must have had something running in parallel).

I was unable to find the BioC github repo for netDx in the devel branch -
what is the URL for that? It would help me ascertain if my push indeed
synchronized with BioC github repo.

Also is there another build process I could use to get quicker feedback on
issues, so I can resolve them sooner? If I understand correctly, waiting
for the nightly build means having the turnaround time of a day to know
whether or not a fix worked.

Best,Shraddha

On Sat, Feb 22, 2020 at 7:49 AM Martin Morgan <mtmorgan.bioc using gmail.com>
wrote:

> We've removed netDx.examples from the build manifest and from our git
> repository; these changes will propagate through the system over the next
> couple of days. Thanks for pointing this out!
>
> The builds are nightly, and summarized from this page
> http://bioconductor.org/checkResults/
>
> This is the report for your package
>
>
> http://bioconductor.org/checkResults/3.11/bioc-LATEST/netDx/tokay2-checksrc.html
>
> Note the 'snapshot' date (the time the nightly builds started) and the
> time the page was generated (after the completion of nightly builds of all
> packages). Any commit after the snapshot date won't be included in the
> build report.
>
> Looks like there is a (obscure!) problem on the Linux builder -- parallel
> evaluation is often challenging to make robust, because the builder is
> heavily used, and a better strategy is usually to tackle more modest
> analyses in examples.
>
> Martin
>
> On 2/21/20, 2:43 PM, "Bioc-devel on behalf of Shraddha Pai" <
> bioc-devel-bounces using r-project.org on behalf of shraddhapai.neuro using gmail.com>
> wrote:
>
>     Hello BioC team,
>     My package netDx was recently accepted to BioC (yay!). Its original
>     companion package netDx.examples was, as well. However, the latter is
> now
>     outdated because I'm pulling the data for the examples directly from
>     BioConductor.
>
>     How can I delete the netDx.examples package from BioConductor?
>
> https://bioconductor.org/packages/devel/data/experiment/html/netDx.examples.html
>
>     Separately, I am also refreshing my memory about how feedback from the
>     build process works after a package is submitted, so I may have
> questions
>     after reading the instructions...
>
>     Thank you,
>     Shraddha
>     --
>     --
>     Shraddha Pai, PhD
>     http://shraddhapai.com ; @spaiglass on Twitter
>     Post-doctoral Fellow, http://baderlab.org
>     The Donnelly Centre for Cellular and Biomolecular Research
>     University of Toronto
>
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>
>     _______________________________________________
>     Bioc-devel using r-project.org mailing list
>     https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>

-- 
--
Shraddha Pai, PhD
http://shraddhapai.com ; @spaiglass on Twitter
Post-doctoral Fellow, http://baderlab.org
The Donnelly Centre for Cellular and Biomolecular Research
University of Toronto

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