[Bioc-devel] updating released version of package

Ted Natoli ted@e@n@to|| @end|ng |rom gm@||@com
Thu Dec 10 16:58:15 CET 2020

Hi James,

Thanks for the response. The corresponding changes were committed to the
master branch on November 23. The development build report seems to be
using the correct code, or at least close to it, as the most recent commit
it shows there is from December 8. I did push to both github and
bioconductor repos and I did bump the version number too, which is
reflected in the development build report but not release.

Here are links to the build reports if it's helpful.

devel: https://bioconductor.org/checkResults/3.13/bioc-LATEST/cmapR/
release: https://bioconductor.org/checkResults/3.12/bioc-LATEST/cmapR/

Thanks again,

On Thu, Dec 10, 2020 at 10:41 AM James W. MacDonald <jmacdon using uw.edu> wrote:

> Did you bump your version number? How long has it been since you committed
> the changes? If you have a github repo, you remembered to push to both the
> Bioconductor and GitHub repos?
> On Thu, Dec 10, 2020 at 10:19 AM Ted Natoli <ted.e.natoli using gmail.com>
> wrote:
>> Hello all,
>> I'm trying to update the released version of my package, cmapR, because
>> one
>> of the packages it depends on has been deprecated and hence install of
>> cmapR now fails.
>> I've followed the instructions here in order to get those changes over to
>> the released version of the package:
>> https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>> However, I don't see that the released version has been updated. Looking
>> at
>> the build reports, the latest commit reflected there is from before I made
>> the code changes. How do I get these changes to propagate to the release
>> branch?
>> I'm sure I must be missing something very basic, but any help would be
>> appreciated.
>> Thanks in advance,
>> Ted
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>> _______________________________________________
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> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099

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