[Bioc-devel] No build report

Wed Apr 29 17:48:20 CEST 2020

Hi Herve,

I definitely didn't look into the right place. I was waiting for an email about my package build report. Thank you so much for pointing this out.

Regards,

Quy

-----Original Message-----
From: Hervé Pagès <hpages using fredhutch.org> 
Sent: Wednesday, April 29, 2020 11:44 AM
To: Cao, Quy <quy.cao using umconnect.umt.edu>; Shepherd, Lori <Lori.Shepherd using RoswellPark.org>; Nitesh Turaga <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] No build report

Hi Quy,

Are you looking at the right place? Build report for BioC 3.11 is here

   https://bioconductor.org/checkResults/3.11/bioc-LATEST/

and I see PERFect there, since at least Monday.

Best,
H.

On 4/29/20 08:01, Cao, Quy wrote:
> Dear Lori,
> 
> I haven't seen a build report for the package yet. Should I be waiting for a little bit more?
> 
> Thanks,
> 
> Quy
> 
> From: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
> Sent: Monday, April 27, 2020 11:00 AM
> To: Cao, Quy <quy.cao using umconnect.umt.edu>; Nitesh Turaga 
> <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
> Subject: Re: No build report
> 
> It looks like you had merge conflicts with the version bump to 1.1.1  until late Sat night:
> 
> commit 199ad444e10c81c472deefe5dff5e32dff977b41
> Author: Quy Xuan Cao <quy.cao using umontana.edu<mailto:quy.cao using umontana.edu>>
> Date:   Sat Apr 25 23:33:03 2020 -0400
> 
>      Bump up to version 1.1.1 on github
> 
> 
> This would be too late to be picked up on Sunday's build report but should be reflected in today's (normally posted sometime between 3-5PM EST).  If it isn't reflected in today's report, We (the core team)  are doing the freeze and bump and branch for the RELEASE_3_11 and it should resolve itself after that.
> 
> Cheers,
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> ________________________________
> From: Bioc-devel 
> <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.
> org>> on behalf of Cao, Quy 
> <quy.cao using umconnect.umt.edu<mailto:quy.cao using umconnect.umt.edu>>
> Sent: Monday, April 27, 2020 10:15 AM
> To: Nitesh Turaga 
> <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>>; Bioc-devel 
> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Subject: [Bioc-devel] No build report
> 
> Dear all,
> 
> I have pushed my updated package PERFect to Bioconductor last weekend but I haven't seen any build report yet. Is there something I can do in this situation?
> 
> Thanks,
> 
> Quy
> 
> -----Original Message-----
> From: Bioc-devel 
> <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.
> org>> On Behalf Of Nitesh Turaga
> Sent: Monday, April 27, 2020 9:00 AM
> To: Leonardo Collado Torres 
> <lcolladotor using gmail.com<mailto:lcolladotor using gmail.com>>; Bioc-devel 
> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Cc: Carmina Barberena Jonas 
> <car.barjon using gmail.com<mailto:car.barjon using gmail.com>>
> Subject: Re: [Bioc-devel] regutools: request to add more git push 
> access
> 
> Hi Leo,
> 
> I've added you and Alejandro to the regutools package.
> 
> Carmina and Emiliano, please confirm the email addresses you'll be using. I can add you both as well, and create BiocCredentials accounts for you.
> 
> 
> Nitesh
> 
> On 4/26/2020 11:42 PM, Leonardo Collado Torres wrote:
>> Hi Nitesh,
>>
>> Could you add me (l.collado-torres) and Alejandro Reyes (what's your 
>> svn username Alejandro?) to regutools' list of contributors that have 
>> git push access? I think this is what we are supposed to do from 
>> re-reading https://urldefense.proofpoint.com/v2/url?u=https-3A__secure-2Dweb.cisco.com_1ss3pRMDsJo76mWIsyzXe9lDXoItH2sFabu1CE0znVtuQca1EmsAJSreHomRLs6G6xn-5FgOm6dFEx0dX7CnDzGwE4-5FuklxxTxCsGVOB-5FKCeo13s4UraPVR7afmm8-5FrnmkVrEWTGiTb3jvNrN-5FQDpXBQaMnWw2ymPtot2vNWY5mQp3d5vGiB0NhIRQnxoz7znJB70m6qEvbzJu1oIbjW5EkXrqiXt8ED0uwY1-2Db-5FL9vGSG6xw1MD3dFa2e6DuqHVr1fhCs4SFAGup5Ih2Ns9dFNEsoptDSjsEznRqTC8DIP4FHujFuZGPlFEcQXq37L-5FuE3-5FFlIEFSaT4zaqdX3r-5FcPnQ_https-253A-252F-252Fgithub.com-252FBioconductor-252FContributions-252Fissues-252F1393-2523issuecomment-2D597202057&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6VqjQ&s=HWm6YBMuhNa8NWPpCStnczlVUMxptH24b7uGVReCzzg&e= .
>>
>> Carmina & Emiliano might want git push access too, but they do not 
>> have BioC git accounts as far as I know.
>>
>> Anyway, for now, I just wanted to add two commits already on GitHub 
>> and push them to BioC's git repo following 
>> https://urldefense.proofpoint.com/v2/url?u=http-3A__secure-2Dweb.cisc
>> o.com_1cFasDB-5Fkkp19Ri6C4NTgSGk39cBX-5FQF8Xn6DTqLzEL0ijtRrKn9gGLKXPG
>> MHF0rrpS7AHZXUEHFchYfU-2Di08pRgke3QTkgyYR60jav1vUCef7Y-5FhfWdJr6A5Eoe
>> SXiE3GAXDGelk7GufWzF-2DPMrSGMVZIR19bEGVB2jmYRSCDg-5FY3Bx2mhfjHjvOTuf8
>> LldH6lSBbyW8MTvNOy9n9Ilybk5z-2DjUdXNyixRmRmuioLC0jmip-2D-5F8jinrjB1qP
>> yFmIVPsy-5FvCLy-5FyPiZMsrsgK7TqeETN4FLwh0W0ey1uMCUDDrqdSgpLcdyxmKWXuv
>> t6ZPa7PjgeUFJfPT-2Du8RRYzHgEcJ4K0T5K2GXZqmlChCMOo_http-253A-252F-252F
>> bioconductor.org-252Fdevelopers-252Fhow-2Dto-252Fgit-252Fsync-2Dexist
>> ing-2Drepositori&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGb
>> WY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6
>> VqjQ&s=u2sFG4IufIt1g6tu-QFushAuaLvtlWi73NU-s-mAuhY&e=
>> es/
>> before BioC 3.11's freeze.
>>
>> Thanks,
>> Leo
>>
>> _______________________________________________
>> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing 
>> list 
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__secure-2Dweb.cis
>> co.com_1FPy1mLnCRO4TAB6gES9DdpTKRi0nfju4Jo8fdrpIXLGRb6TToHLD-5FSrdXWM
>> kprVgbO8wD0WP8jv0AMFq3SwEhj5qefE3vKBK6ty-5FSrnB38W89nw16Qnwpdl6rJJ-5F
>> j-2DkAc-2DIBG15lXpt9ZGMltamh6dSEhN8kr74OiP2Eu8YkHa6qtt5KrH9mEAo8qqiKf
>> rKunI9YBghKaNGwhpf1WnhkUwYwt3EI75Q98sMy91lhyEd1KtF5HUTY-5F-2Dj2JBCugv
>> hu4i2Ugx4B5578ISwRLAtUwpdIFGfuznPilVZmV-2D1BuTqkq8CfwNkks5x3obLruDxTJ
>> 0RjI4Nd6HbAu1Q7mT-2D3EQ_https-253A-252F-252Fstat.ethz.ch-252Fmailman-
>> 252Flistinfo-252Fbioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7
>> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqri
>> ZB_wUdNPOJFK6VqjQ&s=uG0mjXnc-KjPS9oEny8nCbqcjIiF_-ttDi77eDjOcIQ&e=
> 
> _______________________________________________
> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__secure-2Dweb.cisc
> o.com_1FPy1mLnCRO4TAB6gES9DdpTKRi0nfju4Jo8fdrpIXLGRb6TToHLD-5FSrdXWMkp
> rVgbO8wD0WP8jv0AMFq3SwEhj5qefE3vKBK6ty-5FSrnB38W89nw16Qnwpdl6rJJ-5Fj-2
> DkAc-2DIBG15lXpt9ZGMltamh6dSEhN8kr74OiP2Eu8YkHa6qtt5KrH9mEAo8qqiKfrKun
> I9YBghKaNGwhpf1WnhkUwYwt3EI75Q98sMy91lhyEd1KtF5HUTY-5F-2Dj2JBCugvhu4i2
> Ugx4B5578ISwRLAtUwpdIFGfuznPilVZmV-2D1BuTqkq8CfwNkks5x3obLruDxTJ0RjI4N
> d6HbAu1Q7mT-2D3EQ_https-253A-252F-252Fstat.ethz.ch-252Fmailman-252Flis
> tinfo-252Fbioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvim
> eWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPO
> JFK6VqjQ&s=uG0mjXnc-KjPS9oEny8nCbqcjIiF_-ttDi77eDjOcIQ&e=
> 
> _______________________________________________
> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__secure-2Dweb.cisc
> o.com_1FPy1mLnCRO4TAB6gES9DdpTKRi0nfju4Jo8fdrpIXLGRb6TToHLD-5FSrdXWMkp
> rVgbO8wD0WP8jv0AMFq3SwEhj5qefE3vKBK6ty-5FSrnB38W89nw16Qnwpdl6rJJ-5Fj-2
> DkAc-2DIBG15lXpt9ZGMltamh6dSEhN8kr74OiP2Eu8YkHa6qtt5KrH9mEAo8qqiKfrKun
> I9YBghKaNGwhpf1WnhkUwYwt3EI75Q98sMy91lhyEd1KtF5HUTY-5F-2Dj2JBCugvhu4i2
> Ugx4B5578ISwRLAtUwpdIFGfuznPilVZmV-2D1BuTqkq8CfwNkks5x3obLruDxTJ0RjI4N
> d6HbAu1Q7mT-2D3EQ_https-253A-252F-252Fstat.ethz.ch-252Fmailman-252Flis
> tinfo-252Fbioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvim
> eWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPO
> JFK6VqjQ&s=uG0mjXnc-KjPS9oEny8nCbqcjIiF_-ttDi77eDjOcIQ&e=
> 
> This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mail
> man_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeA
> vimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUd
> NPOJFK6VqjQ&s=E-6YLbSDBVvhQMqPB9FHupxl3Qa9py6-rYgGkE9Tmvk&e=
> 

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319