[Bioc-devel] No build report

[Shepherd, Lori]

There are only automatic emails when a package fails.  You can get the daily build reports by going to

http://bioconductor.org/checkResults/

That has the devel (3.12) and release (3.11) build reports updated daily.



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Cao, Quy <quy.cao using umconnect.umt.edu>
Sent: Wednesday, April 29, 2020 11:48 AM
To: Herv� Pag�s <hpages using fredhutch.org>; Shepherd, Lori <Lori.Shepherd using RoswellPark.org>; Nitesh Turaga <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
Subject: RE: [Bioc-devel] No build report

Hi Herve,

I definitely didn't look into the right place. I was waiting for an email about my package build report. Thank you so much for pointing this out.

Regards,

Quy

-----Original Message-----
From: Herv� Pag�s <hpages using fredhutch.org>
Sent: Wednesday, April 29, 2020 11:44 AM
To: Cao, Quy <quy.cao using umconnect.umt.edu>; Shepherd, Lori <Lori.Shepherd using RoswellPark.org>; Nitesh Turaga <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] No build report

Hi Quy,

Are you looking at the right place? Build report for BioC 3.11 is here

   https://secure-web.cisco.com/1gMA68k6fiM2uje0S7wCCvZoW8u_6EGGaV8Nc0tYuHFhQZZe2IJJAyERr0wx2-P9f-fbCA5I_rJN2lKuHy59xxp0BVEmADd2Ui7AwZcU-MyyAUJWJi1rjNgIyTV7rW0QdemQ3jKJZdyp1qeT7xDqBzsRsqIJOWBrKZ_dWHw8DgqQUJ8ObOc7XPdi6_FqCicm6Tf6sZ3bQ1A8bORqlfuuLH6T47y6ns4SZJvgkoopG8m6QXE0mvNfLXkN0dyns9DreZ_7engePoAannsWaBO0jNg3_pW4QzRAMZ8TfXw9fWp2_iPCjClDg3L5j7xdJW4q8ReWTXdEnvT2JzAfJSVCs-MR6KE50KkrHPpmWkcTQna8/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.11%2Fbioc-LATEST%2F

and I see PERFect there, since at least Monday.

Best,
H.


On 4/29/20 08:01, Cao, Quy wrote:
> Dear Lori,
>
> I haven't seen a build report for the package yet. Should I be waiting for a little bit more?
>
> Thanks,
>
> Quy
>
> From: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
> Sent: Monday, April 27, 2020 11:00 AM
> To: Cao, Quy <quy.cao using umconnect.umt.edu>; Nitesh Turaga
> <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
> Subject: Re: No build report
>
> It looks like you had merge conflicts with the version bump to 1.1.1  until late Sat night:
>
> commit 199ad444e10c81c472deefe5dff5e32dff977b41
> Author: Quy Xuan Cao <quy.cao using umontana.edu<mailto:quy.cao using umontana.edu>>
> Date:   Sat Apr 25 23:33:03 2020 -0400
>
>      Bump up to version 1.1.1 on github
>
>
> This would be too late to be picked up on Sunday's build report but should be reflected in today's (normally posted sometime between 3-5PM EST).  If it isn't reflected in today's report, We (the core team)  are doing the freeze and bump and branch for the RELEASE_3_11 and it should resolve itself after that.
>
> Cheers,
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel
> <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.
> org>> on behalf of Cao, Quy
> <quy.cao using umconnect.umt.edu<mailto:quy.cao using umconnect.umt.edu>>
> Sent: Monday, April 27, 2020 10:15 AM
> To: Nitesh Turaga
> <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>>; Bioc-devel
> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Subject: [Bioc-devel] No build report
>
> Dear all,
>
> I have pushed my updated package PERFect to Bioconductor last weekend but I haven't seen any build report yet. Is there something I can do in this situation?
>
> Thanks,
>
> Quy
>
> -----Original Message-----
> From: Bioc-devel
> <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.
> org>> On Behalf Of Nitesh Turaga
> Sent: Monday, April 27, 2020 9:00 AM
> To: Leonardo Collado Torres
> <lcolladotor using gmail.com<mailto:lcolladotor using gmail.com>>; Bioc-devel
> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Cc: Carmina Barberena Jonas
> <car.barjon using gmail.com<mailto:car.barjon using gmail.com>>
> Subject: Re: [Bioc-devel] regutools: request to add more git push
> access
>
> Hi Leo,
>
> I've added you and Alejandro to the regutools package.
>
> Carmina and Emiliano, please confirm the email addresses you'll be using. I can add you both as well, and create BiocCredentials accounts for you.
>
>
> Nitesh
>
> On 4/26/2020 11:42 PM, Leonardo Collado Torres wrote:
>> Hi Nitesh,
>>
>> Could you add me (l.collado-torres) and Alejandro Reyes (what's your
>> svn username Alejandro?) to regutools' list of contributors that have
>> git push access? I think this is what we are supposed to do from
>> re-reading https://secure-web.cisco.com/1MIwt-sjl5gY10-P6VV_cJ144ZwWaRi038-Ms6c7tQ8ggiPlfLpEj9_KwCCKuo6-vp8PMPnHjFhdIuPNEpaA8JGBFlqq_fnKDuR1DcQ-etYA86uUEigbL6v7bHqhBzAvMWs-r-E3s2hqZBd9keG4_2zOnJPdx6EOZ6U53OGjwdZdOqLsfVsMUvR5zrOY9dLYn3VgLFwBAz1h-XyzBsa0YFZo3zEUv4ZzazLV2qIrT4yMqzyZpDbD5LkxkXwG4FrmFTCyH9R14JUuZqMr4MP0WPTP_VZMhylNzpnk7-VxPRSoQtZRPlilZHzQXPGY7ijsI/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_1ss3pRMDsJo76mWIsyzXe9lDXoItH2sFabu1CE0znVtuQca1EmsAJSreHomRLs6G6xn-5FgOm6dFEx0dX7CnDzGwE4-5FuklxxTxCsGVOB-5FKCeo13s4UraPVR7afmm8-5FrnmkVrEWTGiTb3jvNrN-5FQDpXBQaMnWw2ymPtot2vNWY5mQp3d5vGiB0NhIRQnxoz7znJB70m6qEvbzJu1oIbjW5EkXrqiXt8ED0uwY1-2Db-5FL9vGSG6xw1MD3dFa2e6DuqHVr1fhCs4SFAGup5Ih2Ns9dFNEsoptDSjsEznRqTC8DIP4FHujFuZGPlFEcQXq37L-5FuE3-5FFlIEFSaT4zaqdX3r-5FcPnQ_https-253A-252F-252Fgithub.com-252FBioconductor-252FContributions-252Fissues-252F1393-2523issuecomment-2D597202057%26d%3DDwICAg%26c%3DeRAMFD45gAfqt84VtBcfhQ%26r%3DBK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA%26m%3D8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6VqjQ%26s%3DHWm6YBMuhNa8NWPpCStnczlVUMxptH24b7uGVReCzzg%26e%3D .
>>
>> Carmina & Emiliano might want git push access too, but they do not
>> have BioC git accounts as far as I know.
>>
>> Anyway, for now, I just wanted to add two commits already on GitHub
>> and push them to BioC's git repo following
>> https://secure-web.cisco.com/1ZSBuuXLGyLjC2ry03WPD13E1PBsHxG9-OZGJus6al8a3EolotynV49Te5NrBwzIWels87Z67R4S8u8-K8Jj-QbqmPQHwMIkPrHie3tUwwo-mhI1AthvDQXtoCIqiXGmxOlyrwOqXBxLGV5nWd55uIgAyPJqlOiJ1YspEO6J1LFG4muMKph-jkk2dnP-0Gg4oM5KbECrxnLYVZZCDym2vzO_IlmBt-nA6VG9HtmLUKFFd57bbAQxEkrNC9S9nFRh_l99Tghcn0OsE-N7PWPKDGLGbO1qEatV63QqWrOhyj-Iig-MXFKC6aFrv2xGlXnQq/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttp-3A__secure-2Dweb.cisc
>> o.com_1cFasDB-5Fkkp19Ri6C4NTgSGk39cBX-5FQF8Xn6DTqLzEL0ijtRrKn9gGLKXPG
>> MHF0rrpS7AHZXUEHFchYfU-2Di08pRgke3QTkgyYR60jav1vUCef7Y-5FhfWdJr6A5Eoe
>> SXiE3GAXDGelk7GufWzF-2DPMrSGMVZIR19bEGVB2jmYRSCDg-5FY3Bx2mhfjHjvOTuf8
>> LldH6lSBbyW8MTvNOy9n9Ilybk5z-2DjUdXNyixRmRmuioLC0jmip-2D-5F8jinrjB1qP
>> yFmIVPsy-5FvCLy-5FyPiZMsrsgK7TqeETN4FLwh0W0ey1uMCUDDrqdSgpLcdyxmKWXuv
>> t6ZPa7PjgeUFJfPT-2Du8RRYzHgEcJ4K0T5K2GXZqmlChCMOo_http-253A-252F-252F
>> bioconductor.org-252Fdevelopers-252Fhow-2Dto-252Fgit-252Fsync-2Dexist
>> ing-2Drepositori&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGb
>> WY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6
>> VqjQ&s=u2sFG4IufIt1g6tu-QFushAuaLvtlWi73NU-s-mAuhY&e=
>> es/
>> before BioC 3.11's freeze.
>>
>> Thanks,
>> Leo
>>
>> _______________________________________________
>> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing
>> list
>> https://secure-web.cisco.com/1l3yp-lQMddHnD1WBGRjWc4C-0F85h5bF4u7DC3SFtN_gMY6gC77zc1oelJUjveNFwj3SEd00abpsXT8XibTtq_CnP8cmVtomV-xzggXqml5g2w7QJ6LoaePRdsfoY-Qfo-asUiwWd7e93VducPTc1JpiLoX1FWqmyalbLwMmqKNWmSPKaSFMKHXLxVUl17VLRhWKImwcPYdeaDB36TyCYvJ1ZVjhmz4WQVmqXTnDKA3sJ81R2pb7XGtqDV-DiUpnDnIrAspUuNjMCEDnQBPhveTEwJvod1bRFHP0U2Lj5tkdiydzEAelAINAaWwS29QC/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cis
>> co.com_1FPy1mLnCRO4TAB6gES9DdpTKRi0nfju4Jo8fdrpIXLGRb6TToHLD-5FSrdXWM
>> kprVgbO8wD0WP8jv0AMFq3SwEhj5qefE3vKBK6ty-5FSrnB38W89nw16Qnwpdl6rJJ-5F
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>> 0RjI4Nd6HbAu1Q7mT-2D3EQ_https-253A-252F-252Fstat.ethz.ch-252Fmailman-
>> 252Flistinfo-252Fbioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7
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>> ZB_wUdNPOJFK6VqjQ&s=uG0mjXnc-KjPS9oEny8nCbqcjIiF_-ttDi77eDjOcIQ&e=
>
> _______________________________________________
> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
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> _______________________________________________
> Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
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--
Herv� Pag�s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319


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