[Bioc-devel] No build report

Wed Apr 29 17:43:37 CEST 2020

Hi Quy,

Are you looking at the right place? Build report for BioC 3.11 is here

   https://bioconductor.org/checkResults/3.11/bioc-LATEST/

and I see PERFect there, since at least Monday.

Best,
H.

On 4/29/20 08:01, Cao, Quy wrote:
> Dear Lori,
> 
> I haven't seen a build report for the package yet. Should I be waiting for a little bit more?
> 
> Thanks,
> 
> Quy
> 
> From: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
> Sent: Monday, April 27, 2020 11:00 AM
> To: Cao, Quy <quy.cao using umconnect.umt.edu>; Nitesh Turaga <nturaga.bioc using gmail.com>; Bioc-devel <bioc-devel using r-project.org>
> Subject: Re: No build report
> 
> It looks like you had merge conflicts with the version bump to 1.1.1  until late Sat night:
> 
> commit 199ad444e10c81c472deefe5dff5e32dff977b41
> Author: Quy Xuan Cao <quy.cao using umontana.edu<mailto:quy.cao using umontana.edu>>
> Date:   Sat Apr 25 23:33:03 2020 -0400
> 
>      Bump up to version 1.1.1 on github
> 
> 
> This would be too late to be picked up on Sunday's build report but should be reflected in today's (normally posted sometime between 3-5PM EST).  If it isn't reflected in today's report, We (the core team)  are doing the freeze and bump and branch for the RELEASE_3_11 and it should resolve itself after that.
> 
> Cheers,
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Cao, Quy <quy.cao using umconnect.umt.edu<mailto:quy.cao using umconnect.umt.edu>>
> Sent: Monday, April 27, 2020 10:15 AM
> To: Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>>; Bioc-devel <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Subject: [Bioc-devel] No build report
> 
> Dear all,
> 
> I have pushed my updated package PERFect to Bioconductor last weekend but I haven't seen any build report yet. Is there something I can do in this situation?
> 
> Thanks,
> 
> Quy
> 
> -----Original Message-----
> From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> On Behalf Of Nitesh Turaga
> Sent: Monday, April 27, 2020 9:00 AM
> To: Leonardo Collado Torres <lcolladotor using gmail.com<mailto:lcolladotor using gmail.com>>; Bioc-devel <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Cc: Carmina Barberena Jonas <car.barjon using gmail.com<mailto:car.barjon using gmail.com>>
> Subject: Re: [Bioc-devel] regutools: request to add more git push access
> 
> Hi Leo,
> 
> I've added you and Alejandro to the regutools package.
> 
> Carmina and Emiliano, please confirm the email addresses you'll be using. I can add you both as well, and create BiocCredentials accounts for you.
> 
> 
> Nitesh
> 
> On 4/26/2020 11:42 PM, Leonardo Collado Torres wrote:
>> Hi Nitesh,
>>
>> Could you add me (l.collado-torres) and Alejandro Reyes (what's your
>> svn username Alejandro?) to regutools' list of contributors that have
>> git push access? I think this is what we are supposed to do from
>> re-reading https://urldefense.proofpoint.com/v2/url?u=https-3A__secure-2Dweb.cisco.com_1ss3pRMDsJo76mWIsyzXe9lDXoItH2sFabu1CE0znVtuQca1EmsAJSreHomRLs6G6xn-5FgOm6dFEx0dX7CnDzGwE4-5FuklxxTxCsGVOB-5FKCeo13s4UraPVR7afmm8-5FrnmkVrEWTGiTb3jvNrN-5FQDpXBQaMnWw2ymPtot2vNWY5mQp3d5vGiB0NhIRQnxoz7znJB70m6qEvbzJu1oIbjW5EkXrqiXt8ED0uwY1-2Db-5FL9vGSG6xw1MD3dFa2e6DuqHVr1fhCs4SFAGup5Ih2Ns9dFNEsoptDSjsEznRqTC8DIP4FHujFuZGPlFEcQXq37L-5FuE3-5FFlIEFSaT4zaqdX3r-5FcPnQ_https-253A-252F-252Fgithub.com-252FBioconductor-252FContributions-252Fissues-252F1393-2523issuecomment-2D597202057&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6VqjQ&s=HWm6YBMuhNa8NWPpCStnczlVUMxptH24b7uGVReCzzg&e= .
>>
>> Carmina & Emiliano might want git push access too, but they do not
>> have BioC git accounts as far as I know.
>>
>> Anyway, for now, I just wanted to add two commits already on GitHub
>> and push them to BioC's git repo following
>> https://urldefense.proofpoint.com/v2/url?u=http-3A__secure-2Dweb.cisco.com_1cFasDB-5Fkkp19Ri6C4NTgSGk39cBX-5FQF8Xn6DTqLzEL0ijtRrKn9gGLKXPGMHF0rrpS7AHZXUEHFchYfU-2Di08pRgke3QTkgyYR60jav1vUCef7Y-5FhfWdJr6A5EoeSXiE3GAXDGelk7GufWzF-2DPMrSGMVZIR19bEGVB2jmYRSCDg-5FY3Bx2mhfjHjvOTuf8LldH6lSBbyW8MTvNOy9n9Ilybk5z-2DjUdXNyixRmRmuioLC0jmip-2D-5F8jinrjB1qPyFmIVPsy-5FvCLy-5FyPiZMsrsgK7TqeETN4FLwh0W0ey1uMCUDDrqdSgpLcdyxmKWXuvt6ZPa7PjgeUFJfPT-2Du8RRYzHgEcJ4K0T5K2GXZqmlChCMOo_http-253A-252F-252Fbioconductor.org-252Fdevelopers-252Fhow-2Dto-252Fgit-252Fsync-2Dexisting-2Drepositori&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8FW13IFEzMh6ofnZWE-pQBRqriZB_wUdNPOJFK6VqjQ&s=u2sFG4IufIt1g6tu-QFushAuaLvtlWi73NU-s-mAuhY&e=
>> es/
>> before BioC 3.11's freeze.
>>
>> Thanks,
>> Leo
>>
>> _______________________________________________
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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