[Bioc-devel] version inconsistence in the development version page and the build page of a bioconductor package, cogena

[Shepherd, Lori]

We don't update the pages with broken versions of packages.  3.21.1 as you showed has an  ERROR so it will not propagate and the landing page will keep the last working version in this case 3.21.0.
Please see the follow page that not only explains this but also has advice on the length 1 vector error

https://bioconductor.org/developers/how-to/troubleshoot-build-report/<http://bioconductor.org/developers/how-to/troubleshoot-build-report/>

You will need R 4.0.0 the latest versions of packages in bioc 3.11 and certain extra environment variables set.

Hope this helps.

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________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zhilong Jia <zhilongjia using gmail.com>
Sent: Monday, April 20, 2020 8:31:15 PM
To: bioc-devel <bioc-devel using r-project.org>
Subject: [Bioc-devel] version inconsistence in the development version page and the build page of a bioconductor package, cogena

Hi, Bioconductor community,

I found it is inconsistent in the versions of the development package,
cogena. I am maintaining this package.

For example, the build page of my package cogena is 3.21.1 (
https://secure-web.cisco.com/1niMGhyNTfF8jiS5lT3i2Rb3xXWhDkoi1JCl6-XZhhtc6_q449aZfO9FUdvp1a2c7GCevNe1_DPydUg6-u3uHkXh5x77uXa04a7mh3tnD-zBRH-tfFCcReiQF5B5Bxl83osIerP6lYuO9Io7M6Bi0OtD2cbC2p31KXBttzZiQZa2x7tcP1rDR6AltBZcBh4IBPx0-SRE5eC8vT6Bmgg0hqQvuKmJyKQdzDQIwu8ocj25e4ol-zRV9iwJClHFPjFSH56xcLdChTAhJ6MfzT5ki1pfehEriqRK_00mlrFchYjxCLuHa7g-FEnBL-aaO_566lOJAvYZbFwT3PfZWxymtEw/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.11%2Fbioc-LATEST%2Fcogena%2Fmalbec2-buildsrc.html),
while for the development package page (
https://secure-web.cisco.com/1KpxQxYvyy55wIJ5hN86YJuSNvX5N7NMotupZMpxXv0lrPSg9rGMiK991I6Lbz4ywU6KjoiVPMcA_VfI47h2g06WSnGFaY1BkizciL2pvhjdR84HKt7RrYbSTVQRGtQjeNxt5mm-JRo4JCk-9rr7qmFTxpOa4OVKX6ml7WrrqpwG9xVZ3MLE3bnnqpNG2WBeWdy_KteX-dvLlQGnGb5afa_Q0omTtf97GymH33obzHhmMmVn4-u164K85pZHtjW1lEopDwDT0phA7amxtJpP-2ANp7jwWPrBqBC98WppUqE3vHhhyOuiTYaSi4WoTtgkuCy8MC_iwJ1fBKYHSE2iH-g/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.11%2Fbioc%2Fhtml%2Fcogena.html), the code is
3.21.0. So where can I check the code of the build version of this package?
Bioconductor supply git service, so can we browser code at git.bioconductor
as well. just like GitHub?

Recently, there is a check error report ("EXPR must be a length 1 vector" (
https://secure-web.cisco.com/1niMGhyNTfF8jiS5lT3i2Rb3xXWhDkoi1JCl6-XZhhtc6_q449aZfO9FUdvp1a2c7GCevNe1_DPydUg6-u3uHkXh5x77uXa04a7mh3tnD-zBRH-tfFCcReiQF5B5Bxl83osIerP6lYuO9Io7M6Bi0OtD2cbC2p31KXBttzZiQZa2x7tcP1rDR6AltBZcBh4IBPx0-SRE5eC8vT6Bmgg0hqQvuKmJyKQdzDQIwu8ocj25e4ol-zRV9iwJClHFPjFSH56xcLdChTAhJ6MfzT5ki1pfehEriqRK_00mlrFchYjxCLuHa7g-FEnBL-aaO_566lOJAvYZbFwT3PfZWxymtEw/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.11%2Fbioc-LATEST%2Fcogena%2Fmalbec2-buildsrc.html
)
 ) about cogena. I am not sure what's the problem. Probably related to
rmarkdown or R4.0. So far I cannot install R4.0 smoothly, though the
Bioconductor 3.11 needs this version to build.

Thank you.

Zhilong

--
Zhilong JIA
zhilongjia using gmail.com

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