[Bioc-devel] Got timeout for machv2 BUILD

[Hervé Pagès]

For some reasons the generation of the plots in the vignette is VERY 
slow on machv2. 'R CMD build' actually completed... after 6h! This is 
still under investigation.

Best,
H.


On 4/17/20 12:11, Jianhong Ou, Ph.D. wrote:
> Hi,
> 
> I got timeout for my package motifStack in machv2. But I don't know what cuased the issue.
> 
> Any help would be greatly appreciated.
> 
> Jianhong.
> ________________________________
> From: Jianhong Ou, Ph.D.
> Sent: Wednesday, April 15, 2020 7:53 AM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: Got timeout for machv2 BUILD
> 
> Hi,
> 
> Hope you are doing well.
> 
> I got timeout for my package motifStack in machv2. The ellapsedTime is 2403.0 seconds while in tokay2 is 82.1 seconds and in malbec2 is 126.1 seconds. I have limited information how to debug.
> Could you share your suggestion? Thank you.
> 
> 
> 
> Yours Sincerely,
> 
> Jianhong Ou
> 
> Email: jianhong.ou using duke.edu
> Bioinformatician II
> Department of Cell Biology
> Duke University School of Medicine
> Durham, NC, 27710
> 
> Confidentiality Notice:\ This e-mail message, including ...{{dropped:12}}
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=a83aImZ7c6KpUeEwr7eFpQuhOhlc-gRDnLp6RuQ9Q54&s=_7BtJGe9UeLXCftvPCoyrq3FIKBxCMLUVZwuU9GOx7w&e=
> 

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319