[Bioc-devel] Got timeout for machv2 BUILD

[Jianhong Ou, Ph.D.]

Hi Herve,

Thank you for your help.

Jianhong.

On 4/17/20, 4:14 PM, "Hervé Pagès" <hpages using fredhutch.org> wrote:

    For some reasons the generation of the plots in the vignette is VERY 
    slow on machv2. 'R CMD build' actually completed... after 6h! This is 
    still under investigation.
    
    Best,
    H.
    
    
    On 4/17/20 12:11, Jianhong Ou, Ph.D. wrote:
    > Hi,
    > 
    > I got timeout for my package motifStack in machv2. But I don't know what cuased the issue.
    > 
    > Any help would be greatly appreciated.
    > 
    > Jianhong.
    > ________________________________
    > From: Jianhong Ou, Ph.D.
    > Sent: Wednesday, April 15, 2020 7:53 AM
    > To: bioc-devel using r-project.org <bioc-devel using r-project.org>
    > Subject: Got timeout for machv2 BUILD
    > 
    > Hi,
    > 
    > Hope you are doing well.
    > 
    > I got timeout for my package motifStack in machv2. The ellapsedTime is 2403.0 seconds while in tokay2 is 82.1 seconds and in malbec2 is 126.1 seconds. I have limited information how to debug.
    > Could you share your suggestion? Thank you.
    > 
    > 
    > 
    > Yours Sincerely,
    > 
    > Jianhong Ou
    > 
    > Email: jianhong.ou using duke.edu
    > Bioinformatician II
    > Department of Cell Biology
    > Duke University School of Medicine
    > Durham, NC, 27710
    > 
    > Confidentiality Notice:\ This e-mail message, including ...{{dropped:12}}
    > 
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    -- 
    Hervé Pagès
    
    Program in Computational Biology
    Division of Public Health Sciences
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