[Bioc-devel] InteractionSet for structural variants

[Bernat Gel Moreno]

Hi all,

Is there any standard recommended container for genomic structural 
variants? I think InteractionSet would work fine for translocation and 
GRanges for inversions and copy number changes, but I don't know what 
would be the recommended way to store them all together using standard 
Bioconductor objects.

And actually, is there any package that would load a SV VCF by lumpy or 
delly and build that object?

Thanks!

Bernat