[Bioc-devel] mzR update in the making: any Travis experts ?

Ramos Perez, Marcel M@rce|@R@mo@Perez @end|ng |rom Ro@we||P@rk@org
Mon Mar 4 20:55:54 CET 2019

Hi Steffen,

I haven't played with it yet but Travis CI has an Artifacts addon that
will trigger
in the `after_script` or `after_failure` stages of the build and upload
log files to an AWS bucket.

You can see the details here:


Best regards,


On 3/4/19 2:34 PM, Neumann, Steffen wrote:
> Hi,
> TL;DR: How can I get to see the *.log files for more information ?!
> I am working on an upgrade of the C++ code in mzR,
> which is challenging to build cross-platform, 
> so we use travis to check before pushing/breaking BioC.
> The Travis config [1] is fairly simple, with main modification
> that we increase the timeouts. 
> Issue is, the builds in [2] e.g. don't give me enough information
> why the build fails. Build is OK:
>   Still running (9 of 40): R CMD build .
>   The command R CMD build . exited with 0.
> but check fails:
>   Still running (1 of 40): R CMD check --no-build-vignettes --no-
> vignettes mzR_2.17.1.tar.gz
>   The command R CMD check --no-build-vignettes --no-vignettes
> mzR_2.17.1.tar.gz exited with 1.
> and logs are not informative enough:
>   * checking whether package ‘mzR’ can be installed ... ERROR
>     Installation failed.
>     See ‘/home/travis/build/sneumann/mzR/mzR.Rcheck/00install.out’ for
> details.
>   * DONE
>     Status: 1 ERROR, 2 NOTEs
>     See ‘/home/travis/build/sneumann/mzR/mzR.Rcheck/00check.log’ for
> details.
> => How can I get to see the *.log files for more information ?!
> Thanks in advance, 
> Yours,
> Steffen
> [1] 
> https://github.com/sneumann/mzR/blob/feature/updatePwiz20190301/.travis.yml#L22
> [2] https://travis-ci.org/sneumann/mzR/branches
> [3] https://travis-ci.org/sneumann/mzR/builds/501622960

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

More information about the Bioc-devel mailing list