[Bioc-devel] mzR update in the making: any Travis experts ?

[Neumann, Steffen]

Thanks, 

that got me on track. 

Yours, 
Steffen

On Mon, 2019-03-04 at 19:55 +0000, Ramos Perez, Marcel wrote:
> Hi Steffen,
> 
> I haven't played with it yet but Travis CI has an Artifacts addon
> that
> will trigger
> in the `after_script` or `after_failure` stages of the build and
> upload
> log files to an AWS bucket.
> 
> 
> You can see the details here:
> 
> https://docs.travis-ci.com/user/uploading-artifacts/
> 
> 
> Best regards,
> 
> Marcel
> 
> 
> On 3/4/19 2:34 PM, Neumann, Steffen wrote:
> > Hi,
> > 
> > TL;DR: How can I get to see the *.log files for more information ?!
> > 
> > I am working on an upgrade of the C++ code in mzR,
> > which is challenging to build cross-platform, 
> > so we use travis to check before pushing/breaking BioC.
> > 
> > The Travis config [1] is fairly simple, with main modification
> > that we increase the timeouts. 
> > 
> > Issue is, the builds in [2] e.g. don't give me enough information
> > why the build fails. Build is OK:
> > 
> >   Still running (9 of 40): R CMD build .
> >   The command R CMD build . exited with 0.
> > 
> > but check fails:
> > 
> >   Still running (1 of 40): R CMD check --no-build-vignettes --no-
> > vignettes mzR_2.17.1.tar.gz
> >   The command R CMD check --no-build-vignettes --no-vignettes
> > mzR_2.17.1.tar.gz exited with 1.
> > 
> > and logs are not informative enough:
> > 
> >   * checking whether package ‘mzR’ can be installed ... ERROR
> >     Installation failed.
> >     See ‘/home/travis/build/sneumann/mzR/mzR.Rcheck/00install.out’
> > for
> > details.
> >   * DONE
> >     Status: 1 ERROR, 2 NOTEs
> >     See ‘/home/travis/build/sneumann/mzR/mzR.Rcheck/00check.log’
> > for
> > details.
> > 
> > => How can I get to see the *.log files for more information ?!
> > 
> > Thanks in advance, 
> > Yours,
> > Steffen
> > 
> > 
> > [1] 
> > 
https://github.com/sneumann/mzR/blob/feature/updatePwiz20190301/.travis.yml#L22
> > [2] https://travis-ci.org/sneumann/mzR/branches
> > [3] https://travis-ci.org/sneumann/mzR/builds/501622960
> > 
> > 
> 
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IPB Halle                    AG Massenspektrometrie & Bioinformatik
Dr. Steffen Neumann          http://www.IPB-Halle.DE
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