[Bioc-devel] new error with saved HDF5SummarizedExperiment

[Vincent Carey]

Loading required namespace: HDF5Array
Error in .stop_if_bad_dir(dir, prefix) : directory
  "/home/biocbuild/bbs-3.10-bioc/R/library/BiocSklearn/hdf5/tenx_750"
  does not seem to contain an HDF5-based SummarizedExperiment object
  previously saved with saveHDF5SummarizedExperiment()
Calls: <Anonymous> -> .stop_if_bad_dir
Execution halted

it looks like some things are going on in HDF5Array and SummarizedExperiment
that might lead to new constraints on how these work together ... I don't
see
any high-level commentary in these package NEWS

when I try to recreate using current software but older content

> saveHDF5SummarizedExperiment(se, "tenx_750b")

*Error in assays[[i]] : wrong arguments for subsetting an environment*


Enter a frame number, or 0 to exit


1: saveHDF5SummarizedExperiment(se, "tenx_750b")

2: .write_HDF5SummarizedExperiment(x, rds_path = rds_path, h5_path =
h5_path,

3: .write_h5_assays(x using assays, h5_path, chunkdim, level, verbose)


any hints?

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