[Bioc-devel] error regarding splitAsList from IRanges packages

[Pages, Herve]

Hi Felix,

Another temporary glitch introduced in devel by some recent
changes to S4Vectors/IRanges, sorry. I think I fixed all the
affected packages (was going to fix RNAmodR too but you beat
me to it ;-) ). No more splitAsList related issues on today's
build report :-)

Cheers,
H.


On 6/7/19 10:39, Felix Ernst wrote:
> Hi
> 
> I have a build error for RNAmodR package, which was just added to the Bioc git repo and was build for the first time for 3.10.
> 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=nUfzBXboeDlTdiYJYbEd92E8GKN127Qtor_YYjQqzYE&e=
> 
>> No methods found in package �IRanges� for request: �splitAsList� when loading �ensembldb�
>> Error: object 'splitAsList' is not exported by 'namespace:IRanges'
> 
> I never encountered this particular error during the review process so I am bit out of my depth.
> 
> If I read this error correctly, it was triggered trying to load the ensembldb package (which is an indirect dependency). However, ensembldb did build correctly and splitAsList is as far as I know also exported from IRanges. IRanges also build correctly.
> 
> Thanks for any advice or a pointer, how I can debug this?
> 
> Best regards,
> Felix
> 
> 	[[alternative HTML version deleted]]
> 
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=KrrqI0N9OfEDvqfNppPo2lHmvh53-fJGyDyAz2XvMf8&e=
> 

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319