[Bioc-devel] Using my own genome for CAGER

James W. MacDonald jm@cdon @end|ng |rom uw@edu
Mon Jul 29 22:34:37 CEST 2019

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On Mon, Jul 29, 2019 at 4:32 PM Jaehyun Lee <jaehyunl using andrew.cmu.edu> wrote:

> Hello,
> My name is Jaehyun Lee, an undergraduate student at Carnegie Mellon
> University conducting developmental biology research. I am currently trying
> to run CAGEr using bam files from the CAGE experiment and from my own
> reference genome. However, the specific genome that I need is not available
> in BSgenome. Is there a way of using CAGEr without using a genome from
> BSgenome or is there a way to upload my genome to BSgenome?
> Thank you,
> Jae
> Jaehyun Lee
> Candidate for Bachelor of Science in Biological Sciences
> Carnegie Mellon University, Class of 2020
> jaehyunl using andrew.cmu.edu I 508.523.0203
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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