[Bioc-devel] Using my own genome for CAGER

[Jaehyun Lee]

Hello,

My name is Jaehyun Lee, an undergraduate student at Carnegie Mellon
University conducting developmental biology research. I am currently trying
to run CAGEr using bam files from the CAGE experiment and from my own
reference genome. However, the specific genome that I need is not available
in BSgenome. Is there a way of using CAGEr without using a genome from
BSgenome or is there a way to upload my genome to BSgenome?

Thank you,

Jae
Jaehyun Lee
Candidate for Bachelor of Science in Biological Sciences
Carnegie Mellon University, Class of 2020
jaehyunl using andrew.cmu.edu I 508.523.0203

	[[alternative HTML version deleted]]