[Bioc-devel] Failing to get updated version of the package on Bioconductor

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Jul 15 15:21:30 CEST 2019

We will need more information in order to help you properly.

Could you please inform us of the package that you are referring to?

When you push make sure you are pushing to the git.bioconductor.org. This involves your remotes to be properly set up and that you are pushing to the right location.

Please also show the results of

git remote -v

and the actual git push command you use.

Thank you.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Hamed Haseli <hamedhm using ebi.ac.uk>
Sent: Monday, July 15, 2019 9:17:02 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Failing to get updated version of the package on Bioconductor

Dear All,

I have always problems with updating the R package on Bioconductor and
installing the updated version of the package fro the repository.

The workflow that I follow is like:

   1. Make changes into the source code
   2. Increase the subversion x.y.z to x.y.(z+1)
   3. Push the changes to the repository
   4. Waiting for a day or more for the package to be compiled by

Doing the workflow above, I do not see the changes when I install the
package from Bioconductor. Please can you help?


Hamed Haseli.M

| Hamed Haseli.M, PhD (Statistics)
| Data Scientist, Mouse Informatics
| E: hamedhm using ebi.ac.uk
| P:  +44(0) 1223 494 451
| M: +44(0) 7902 824 097
| W: hamedhaseli.webs.com
| European Bioinformatics Institute,
| Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. CB10 1SD


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