[Bioc-devel] build/check reports and package version available for updated package

Pages, Herve hp@ge@ @end|ng |rom |redhutch@org
Sat Feb 9 10:54:40 CET 2019

Hi Ramon,

We run the software builds every night and normally the build report 
gets updated every morning (for the people on the East Coast). However 
sometimes things don't work as expected. This time the builds went fine 
but the script that updates the report failed so that's why we still see 
the report from the day before. However, it seems that OncoSimulR 2.13.1 
passed 'R CMD check' on all platforms and propagated so this is why you 
see it on the package landing page.

I addressed the issue with the script so hopefully the report will get 
updated today around 10 am EST. We should see OncoSimulR 2.13.1 on this 
new report.



On 2/9/19 01:13, Ramon Diaz-Uriarte wrote:
> Dear All,
> For the development version of a package, I thought that a new version of a
> package (a new version of the archive) was only made available if and when
> the build/check reports had been passed (for the corresponding OS). But now
> I think I am wrong.
> For a package I maintain, OncoSimulR, I am seeing package archives for the
> new version (2.13.1) that correspond to the changes I pushed a couple of
> days ago, on 2019-02-07
> (https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.9_bioc_html_OncoSimulR.html&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=O0cn-X5Sr3_HhPWuSmTxh06I6kzACAP-AsUKsDNCnEU&s=y8Ni6d5RDqXiSzMWYbsOa6z3CQCHAnB7ViGb_iYe70Y&e=); but the
> build report
> (https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.9_bioc-2DLATEST_OncoSimulR_&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=O0cn-X5Sr3_HhPWuSmTxh06I6kzACAP-AsUKsDNCnEU&s=rYQOEwOloojsIaUf3cwDap2VkbgGYyzQjuXOcHMFVmI&e=) is
> still showing the build/check from the previous version (2.13.0), which was
> the one that existed at the time of the snapshot date (2019-02-06 17:01:03
> -0500) of the report.
> Does this mean that a build bin was executed (I presume successfully)
> shortly after I pushed changes? I think it must, given the "Packaged" stamp
> in the DESCRIPTION file of the three compressed files (which shows
> "2019-02-08 01:19:24 UTC; biocbuild" and similar strings). What about the
> install and check tests?
> Sorry if this has been explained before. I've looked around but could not
> find any info about it.
> Thanks,
> R.
> --
> Ramon Diaz-Uriarte
> Department of Biochemistry, Lab B-25
> Facultad de Medicina
> Universidad Autónoma de Madrid
> Arzobispo Morcillo, 4
> 28029 Madrid
> Spain
> Phone: +34-91-497-2412
> Email: rdiaz02 using gmail.com
>         ramon.diaz using iib.uam.es
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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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P.O. Box 19024
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