[Bioc-devel] Bioconductor phenoTest

[Evarist Planet]

Dear Nitesh,

It works now. Thank you very much.

I solved the conflicts and pushed the package. Will keep an eye on the checks to see if it worked well.

Best,

Evarist Planet<https://people.epfl.ch/244181>

Chief Analyst at TronoLab
Laboratory of Virology and Genetics
EPFL
Phone +41 21 69 30940

On 16 Dec 2019, at 16:59, Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org<mailto:Nitesh.Turaga using RoswellPark.org>> wrote:

Hi,

Please try again, I've updated your email address it was listed to a irb-barcelona account previously.

Best,

Nitesh

Dear Lori,

Thank you for your message. I was about to work on the corrections for the package.

The system changed a bit since last time I used it. It seems I first need to get credentials for git. I get an error message which I attached. Seems like my email address is not recognised as a valid email address of package maintainer. I add a second screenshot from the bioconductor website were the same address appears to be related to the package. How should I proceed?

Thank you very much in advance.

Best regards,

Evarist Planet

Chief Analyst at TronoLab
Laboratory of Virology and Genetics
EPFL
Phone +41 21 69 30940

<Screen Shot 2019-12-16 at 10.33.24.png>
<Screen Shot 2019-12-16 at 10.36.06.png>

On 13 Dec 2019, at 15:45, Shepherd, Lori <Lori.Shepherd using RoswellPark.org<mailto:Lori.Shepherd using RoswellPark.org>> wrote:

This is your second warning.  If the package is not fixed by the end of the month we will begin the deprecation process for your package.


Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Shepherd, Lori
Sent: Monday, November 18, 2019 11:12 AM
To: evarist.planet using epfl.ch<mailto:evarist.planet using epfl.ch> <evarist.planet using epfl.ch<mailto:evarist.planet using epfl.ch>>
Subject: Bioconductor phenoTest

Please be advised your package is failing on all three platforms in devel 3.11
http://bioconductor.org/checkResults/devel/bioc-LATEST/phenoTest

The package SNPchip and HTSanalyzeR have been user requested deprecated in Bioconductor 3.10.  You will have to alter your package to not utilize these packages to avoid your own package being deprecated.  We made you aware of this deprecation back in May and the packages have had a deprecation since then as well.


Cheers,

Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263

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