[Bioc-devel] Build error

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Dec 5 14:08:32 CET 2019

Its odd that DelayedArray wouldn't be found.  I'm going to try to kick off a manual rebuild on the Single Package builder to see if it goes away.  I'll move the rest of the correspondence to your open contributions issue.

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Kumar, Ashwath <ashkum90 using gatech.edu>
Sent: Wednesday, December 4, 2019 11:10 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Build error

Hello bioc-devel team,

I recently came across an error when the automatic bot was trying to build my package. The error only happens on OSX systems.




* checking for file CSSQ/DESCRIPTION ... OK
* preparing CSSQ:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* installing *source* package CSSQ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package DelayedArray required by SummarizedExperiment could not be found
Execution halted
ERROR: lazy loading failed for package CSSQ
* removing /private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/RtmpoFOgpq/Rinst54d57fc11079/CSSQ
ERROR: package installation failed

I am not sure how I can go about working on this specially since I do not have access to an OSX system. Can anyone advice on a way to go about dealing with this?

Note: The package did build properly multiple times before. This happened after I implemented some changes as suggested by reviewer. I am not sure if that is what is causing the issue.


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