[Bioc-devel] Error in building vignette for previously stable version

Jakob Willforss j@kob@w||||or@@ @end|ng |rom |mmun@|th@@e
Thu Dec 5 08:57:58 CET 2019

Hi all,

I am the developer of NormalyzerDE. A few days ago the release version of NormalyzerDE started getting errors in the vignette building (with no updates from my side). I saw in the mailing list that others also had encountered issues in the vignette. I don't know how widespread the issue is though.

Is this something I should try to address myself, or just leave it be for now?

I attach the error below.

Best wishes,


* checking for file �NormalyzerDE/DESCRIPTION� ... OK
* preparing �NormalyzerDE�:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building �vignette.Rmd� using rmarkdown
Warning in file(con, "r") :
  file("") only supports open = "w+" and open = "w+b": using the former
! LaTeX Error: Command \VerbBar already defined.
               Or name \end... illegal, see p.192 of the manual.

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
Failed to compile vignette.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See vignette.log for more info.
--- failed re-building �vignette.Rmd�

SUMMARY: processing the following file failed:

Error: Vignette re-building failed.
Execution halted

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