[Bioc-devel] Windows only vignette error - any ideas?

[Andrzej Oleś]

To me this issue doesn't seem to be directly linked to BiocStyle as the
affected package does not depend on it. Might be still a problem with
rmarkdown though.

Cheers,
Andrzej

On Wed, Dec 4, 2019 at 10:12 PM Shepherd, Lori <
Lori.Shepherd using roswellpark.org> wrote:

> We are hoping it is related to this:
> https://stat.ethz.ch/pipermail/bioc-devel/2019-December/015870.html so
> you should just sit tight.
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Christopher John <chris.r.john86 using gmail.com>
> Sent: Wednesday, December 4, 2019 2:05 AM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] Windows only vignette error - any ideas?
>
> Hi
>
> Since this morning I am getting an error for the Windows build only of my
> M3C package, shown below.
>
> Could anyone help please?
>
> Thanks,
>
> Chris
>
> * checking for file 'M3C/DESCRIPTION' ... OK
> * preparing 'M3C':
> * checking DESCRIPTION meta-information ... OK
> * installing the package to build vignettes
> * creating vignettes ... ERROR
> --- re-building 'M3Cvignette.Rmd' using rmarkdown
> ! Package ifvtex Error: Name clash, \ifvtex is already defined.
>
> Error: processing vignette 'M3Cvignette.Rmd' failed with diagnostics:
> Failed to compile M3Cvignette.tex. See
> https://yihui.name/tinytex/r/#debugging for debugging tips. See
> M3Cvignette.log for more info.
> --- failed re-building 'M3Cvignette.Rmd'
>
> SUMMARY: processing the following file failed:
>   'M3Cvignette.Rmd'
>
> Error: Vignette re-building failed.
> Execution halted
>
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