[Bioc-devel] [ext] Re: Vignettes for a data processing package

[Dermot Harnett]

Hi Vincent - thanks, much appreciated.

Here's the current development version of the repository.

https://github.com/ohlerlab/RiboseQC/


<https://github.com/ohlerlab/RiboseQC/settings>

On Mon, Aug 5, 2019 at 1:22 PM Vincent Carey <stvjc using channing.harvard.edu>
wrote:

> Is there an open github repository where this can be examined as a work
> in progress?  If so please let us know and I and likely others will take a
> look
> and make recommendations.
>
> On Mon, Aug 5, 2019 at 6:55 AM Dermot Harnett <dermot.p.harnett using gmail.com>
> wrote:
>
> > Hi
> > I've been put in charge of trying to clean up a package produced in my
> lab
> > into bioconductor compatible code.
> >
> > The package consists of a a few functions (which process annotation,
> > process bam files, and then create a html report, respectively). Each of
> > these functions necessarily take a long time aas they have to traverse a
> > bam file several times, create lots of plots etc.
> >
> > It's proving extremely difficult, even with subsets of the data, to
> create
> > a vignette which can be run in the the bioconductor standard 10minutes.
> > What would you recommend in these circumstances? Is it possible for the
> > package to have a workflow vignette instead of a standard vignette?
> >
> > Best
> > Dermot Harnett, PhD
> > Ohler Group
> > BIMSB, Berlin
> >
> >         [[alternative HTML version deleted]]
> >
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>
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