[Bioc-devel] package rJava can not be loaded in build system OS X

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Apr 25 23:55:15 CEST 2019

You can ignore this error on the Mac builder. We are working on getting the correct binary installed. Once it Is available this should clear up on it's own.


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From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zheng Wei <wzwz using stanford.edu>
Sent: Thursday, April 25, 2019 5:08:43 PM
To: bioc-devel
Subject: [Bioc-devel] package rJava can not be loaded in build system OS X

Dear all,

I find package rJava is not available in build system OS X.

My package esATAC depends on this package so it causes ERROR when building. The ERROR is pasted below.

Is there anyone can fix this problem?



** byte-compile and prepare package for lazy loading Error: .onLoad failed in loadNamespace() for 'rJava', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so':   dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib   Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so   Reason: image not found Execution halted ERROR: lazy loading failed for package ��esATAC�� * removing ��/Library/Frameworks/R.framework/Versions/3.6/Resources/library/esATAC��
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