[Bioc-devel] Unable to reproduce chimeraviz 3.9 build failure (test failure)
hp@ge@ @end|ng |rom |redhutch@org
Wed Apr 24 20:38:11 CEST 2019
This is likely related to an issue with the recently updated
org.Hs.eg.db package. The issue was reported on this list 2 days ago:
A fix for org.Hs.eg.db is on its way. Hopefully it will make the current
test failure in chimeraviz go away. Stay tuned.
Sorry for the inconvenience,
On 4/24/19 11:15, Stian Lågstad wrote:
> The most recent build of chimeraviz failed due to a test failure:
> That the test in question should suddenly fail surprises me, and I'm unable
> to reproduce this locally. Does anyone have ideas as to how I can dig
> deeper into this?
> Thank you!
> Here's an excerpt from build log in case it disappears when the new build
> is done:
> * checking tests ...
> Running ‘testthat.R’
> Running the tests in ‘tests/testthat.R’ failed.
> Last 13 lines of output:
> > test_check("chimeraviz")
> ── 1. Failure: get_ensembl_ids gets the correct Ensembl gene ids for a
> fusion ob
> fusion using gene_upstream@ensembl_id not equal to
> Lengths differ: 2 is not 1
> ══ testthat results
> OK: 170 SKIPPED: 0 FAILED: 1
> 1. Failure: get_ensembl_ids gets the correct Ensembl gene ids for a
> fusion object (@test_utilities.R#217)
> Error: testthat unit tests failed
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